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快速范围扩张的遗传特征:扩散、增长和入侵速度如何影响杂合性和等位基因冲浪。

The genetic signature of rapid range expansions: How dispersal, growth and invasion speed impact heterozygosity and allele surfing.

作者信息

Goodsman Devin W, Cooke Barry, Coltman David W, Lewis Mark A

机构信息

Department of Biological Sciences, CW 405, Biological Sciences Bldg., University of Alberta, Edmonton, Alberta, Canada T6G 2E9.

Canadian Forest Service, Northern Forestry Centre, 5320 122 Street Northwest, Edmonton, Alberta, Canada T6H 3S5.

出版信息

Theor Popul Biol. 2014 Dec;98:1-10. doi: 10.1016/j.tpb.2014.08.005. Epub 2014 Sep 6.

Abstract

As researchers collect spatiotemporal population and genetic data in tandem, models that connect demography and dispersal to genetics are increasingly relevant. The dominant spatiotemporal model of invasion genetics is the stepping-stone model which represents a gradual range expansion in which individuals jump to uncolonized locations one step at a time. However, many range expansions occur quickly as individuals disperse far from currently colonized regions. For these types of expansion, stepping-stone models are inappropriate. To more accurately reflect wider dispersal in many organisms, we created kernel-based models of invasion genetics based on integrodifference equations. Classic theory relating to integrodifference equations suggests that the speed of range expansions is a function of population growth and dispersal. In our simulations, populations that expanded at the same speed but with spread rates driven by dispersal retained more heterozygosity along axes of expansion than range expansions with rates of spread that were driven primarily by population growth. To investigate surfing we introduced mutant alleles in wave fronts of simulated range expansions. In our models based on random mating, surfing alleles remained at relatively low frequencies and surfed less often compared to previous results based on stepping-stone simulations with asexual reproduction.

摘要

随着研究人员同时收集时空种群和遗传数据,将人口统计学与扩散和遗传学联系起来的模型变得越来越重要。入侵遗传学的主要时空模型是踏脚石模型,它代表了一种逐渐的范围扩张,即个体一次跳到一个未被殖民的地点。然而,随着个体远离当前已殖民地区扩散,许多范围扩张发生得很快。对于这些类型的扩张,踏脚石模型并不适用。为了更准确地反映许多生物体中更广泛的扩散情况,我们基于积分差分方程创建了基于核的入侵遗传学模型。与积分差分方程相关的经典理论表明,范围扩张的速度是种群增长和扩散的函数。在我们的模拟中,以相同速度扩张但扩散率驱动扩散速度的种群,沿着扩张轴保留的杂合度比主要由种群增长驱动扩散速度的范围扩张更多。为了研究冲浪现象,我们在模拟范围扩张的波前引入了突变等位基因。在我们基于随机交配的模型中,与之前基于无性繁殖的踏脚石模拟结果相比,冲浪等位基因的频率相对较低,冲浪的频率也较低。

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