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基于通过不同电子密度划分方法获得的原子多极矩计算分子二聚体中的静电相互作用能。

Calculation of electrostatic interaction energies in molecular dimers from atomic multipole moments obtained by different methods of electron density partitioning.

作者信息

Volkov Anatoliy, Coppens Philip

机构信息

Department of Chemistry, State University of New York at Buffalo, 14260-3000, USA.

出版信息

J Comput Chem. 2004 May;25(7):921-34. doi: 10.1002/jcc.20023.

Abstract

Accurate and fast evaluation of electrostatic interactions in molecular systems is still one of the most challenging tasks in the rapidly advancing field of macromolecular chemistry, including molecular recognition, protein modeling and drug design. One of the most convenient and accurate approaches is based on a Buckingham-type approximation that uses the multipole moment expansion of molecular/atomic charge distributions. In the mid-1980s it was shown that the pseudoatom model commonly used in experimental X-ray charge density studies can be easily combined with the Buckingham-type approach for calculation of electrostatic interactions, plus atom-atom potentials for evaluation of the total interaction energies in molecular systems. While many such studies have been reported, little attention has been paid to the accuracy of evaluation of the purely electrostatic interactions as errors may be absorbed in the semiempirical atom-atom potentials that have to be used to account for exchange repulsion and dispersion forces. This study is aimed at the evaluation of the accuracy of the calculation of electrostatic interaction energies with the Buckingham approach. To eliminate experimental uncertainties, the atomic moments are based on theoretical single-molecule electron densities calculated at various levels of theory. The electrostatic interaction energies for a total of 11 dimers of alpha-glycine, N-acetylglycine and L-(+)-lactic acid structures calculated according to Buckingham with pseudoatom, stockholder and atoms-in-molecules moments are compared with those evaluated with the Morokuma-Ziegler energy decomposition scheme. For alpha-glycine a comparison with direct "pixel-by-pixel" integration method, recently developed Gavezzotti, is also made. It is found that the theoretical pseudoatom moments combined with the Buckingham model do predict the correct relative electrostatic interactions energies, although the absolute interaction energies are underestimated in some cases. The good agreement between electrostatic interaction energies computed with Morokuma-Ziegler partitioning, Gavezzotti's method, and the Buckingham approach with atoms-in-molecules moments demonstrates that reliable and accurate evaluation of electrostatic interactions in molecular systems of considerable complexity is now feasible.

摘要

在快速发展的大分子化学领域,包括分子识别、蛋白质建模和药物设计,准确快速地评估分子系统中的静电相互作用仍然是最具挑战性的任务之一。最便捷且准确的方法之一是基于一种白金汉型近似,该近似使用分子/原子电荷分布的多极矩展开。在20世纪80年代中期,研究表明,实验X射线电荷密度研究中常用的伪原子模型可以很容易地与白金汉型方法相结合,用于计算静电相互作用,再加上原子 - 原子势,以评估分子系统中的总相互作用能。虽然已经报道了许多此类研究,但对于纯静电相互作用评估的准确性关注较少,因为误差可能被用于考虑交换排斥和色散力的半经验原子 - 原子势所吸收。本研究旨在评估用白金汉方法计算静电相互作用能的准确性。为了消除实验不确定性,原子矩基于在不同理论水平下计算的理论单分子电子密度。将根据白金汉方法,使用伪原子、股东和分子中的原子矩计算的总共11种α - 甘氨酸、N - 乙酰甘氨酸和L-(+)-乳酸结构二聚体的静电相互作用能,与用Morokuma - Ziegler能量分解方案评估的结果进行比较。对于α - 甘氨酸,还与最近开发的Gavezzotti直接“逐像素”积分方法进行了比较。研究发现,理论伪原子矩与白金汉模型相结合确实能预测正确的相对静电相互作用能,尽管在某些情况下绝对相互作用能被低估了。用Morokuma - Ziegler分区法、Gavezzotti方法以及分子中的原子矩的白金汉方法计算的静电相互作用能之间的良好一致性表明,现在对相当复杂的分子系统中的静电相互作用进行可靠且准确的评估是可行的。

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