Sagui Celeste, Pomorski Pawel, Darden Thomas A, Roland Christopher
Department of Physics, North Carolina State University, Raleigh, North Carolina 27695, USA.
J Chem Phys. 2004 Mar 1;120(9):4530-44. doi: 10.1063/1.1644800.
It has long been known that accurate electrostatics is a key issue for improving current force fields for large-scale biomolecular simulations. Typically, this calls for an improved and more accurate description of the molecular electrostatic potential, which eliminates the artifacts associated with current point charge-based descriptions. In turn, this involves the partitioning of the extended molecular charge distribution, so that charges and multipole moments can be assigned to different atoms. As an alternate to current approaches, we have investigated a charge partitioning scheme that is based on the maximally localized Wannier functions. This has the advantage of partitioning the charge, and placing it around the molecule in a chemically meaningful manner. Moreover, higher order multipoles may all be calculated without any undue numerical difficulties. Tests on isolated molecules and water dimers, show that the molecular electrostatic potentials generated by such a Wannier-function based approach are in excellent agreement with the density functional-based calculations.
长期以来,人们一直知道精确的静电学是改进用于大规模生物分子模拟的当前力场的关键问题。通常,这需要对分子静电势进行改进且更精确的描述,以消除与当前基于点电荷的描述相关的伪影。反过来,这涉及扩展分子电荷分布的划分,以便可以将电荷和多极矩分配给不同的原子。作为当前方法的替代方案,我们研究了一种基于最大局域化万尼尔函数的电荷划分方案。这具有划分电荷并以化学上有意义的方式将其放置在分子周围的优点。此外,可以毫无任何不当数值困难地计算高阶多极矩。对孤立分子和水二聚体的测试表明,这种基于万尼尔函数的方法产生的分子静电势与基于密度泛函的计算结果非常吻合。