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来自噬菌体T4纤维蛋白的三聚化结构域的极快速折叠与缔合。

Very fast folding and association of a trimerization domain from bacteriophage T4 fibritin.

作者信息

Güthe Sarah, Kapinos Larisa, Möglich Andreas, Meier Sebastian, Grzesiek Stephan, Kiefhaber Thomas

机构信息

Division of Biophysical Chemistry, Biozentrum der Universität Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.

出版信息

J Mol Biol. 2004 Apr 2;337(4):905-15. doi: 10.1016/j.jmb.2004.02.020.

Abstract

The foldon domain constitutes the C-terminal 30 amino acid residues of the trimeric protein fibritin from bacteriophage T4. Its function is to promote folding and trimerization of fibritin. We investigated structure, stability and folding mechanism of the isolated foldon domain. The domain folds into the same trimeric beta-propeller structure as in fibritin and undergoes a two-state unfolding transition from folded trimer to unfolded monomers. The folding kinetics involve several consecutive reactions. Structure formation in the region of the single beta-hairpin of each monomer occurs on the submillisecond timescale. This reaction is followed by two consecutive association steps with rate constants of 1.9(+/-0.5)x10(6)M(-1)s(-1) and 5.4(+/-0.3)x10(6)M(-1)s(-1) at 0.58 M GdmCl, respectively. This is similar to the fastest reported bimolecular association reactions for folding of dimeric proteins. At low concentrations of protein, folding shows apparent third-order kinetics. At high concentrations of protein, the reaction becomes almost independent of protein concentrations with a half-time of about 3 ms, indicating that a first-order folding step from a partially folded trimer to the native protein (k=210 +/- 20 s(-1)) becomes rate-limiting. Our results suggest that all steps on the folding/trimerization pathway of the foldon domain are evolutionarily optimized for rapid and specific initiation of trimer formation during fibritin assembly. The results further show that beta-hairpins allow efficient and rapid protein-protein interactions during folding.

摘要

折叠子结构域构成了来自噬菌体T4的三聚体蛋白纤维蛋白的C端30个氨基酸残基。其功能是促进纤维蛋白的折叠和三聚化。我们研究了分离的折叠子结构域的结构、稳定性和折叠机制。该结构域折叠成与纤维蛋白中相同的三聚体β-螺旋桨结构,并经历从折叠三聚体到未折叠单体的两态解折叠转变。折叠动力学涉及几个连续反应。每个单体的单个β-发夹区域的结构形成发生在亚毫秒时间尺度上。此反应之后是两个连续的缔合步骤,在0.58 M盐酸胍存在下,速率常数分别为1.9(±0.5)×10⁶ M⁻¹ s⁻¹和5.4(±0.3)×10⁶ M⁻¹ s⁻¹。这类似于报道的二聚体蛋白折叠最快的双分子缔合反应。在低蛋白浓度下,折叠表现出明显的三级动力学。在高蛋白浓度下,反应几乎与蛋白浓度无关,半衰期约为3毫秒,表明从部分折叠的三聚体到天然蛋白的一级折叠步骤(k = 210 ± 20 s⁻¹)成为限速步骤。我们的结果表明,折叠子结构域折叠/三聚化途径上的所有步骤在进化上都经过优化,以便在纤维蛋白组装过程中快速、特异地启动三聚体形成。结果还表明,β-发夹在折叠过程中允许高效、快速的蛋白质-蛋白质相互作用。

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