Meier Sebastian, Güthe Sarah, Kiefhaber Thomas, Grzesiek Stephan
Division of Structural Biology Biozentrum der Universität Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
J Mol Biol. 2004 Dec 3;344(4):1051-69. doi: 10.1016/j.jmb.2004.09.079.
The C-terminal domain of T4 fibritin (foldon) is obligatory for the formation of the fibritin trimer structure and can be used as an artificial trimerization domain. Its native structure consists of a trimeric beta-hairpin propeller. At low pH, the foldon trimer disintegrates into a monomeric (A-state) form that has similar properties as that of an early intermediate of the trimer folding pathway. The formation of this A-state monomer from the trimer, its structure, thermodynamic stability, equilibrium association and folding dynamics have been characterized to atomic detail by modern high-resolution NMR techniques. The foldon A-state monomer forms a beta-hairpin with intact and stable H-bonds that is similar to the monomer in the foldon trimer, but lacks a defined structure in its N and C-terminal parts. Its thermodynamic stability in pure water is comparable to designed hairpins stabilized in alcohol/water mixtures. Details of the thermal unfolding of the foldon A-state have been characterized by chemical shifts and residual dipolar couplings (RDCs) detected in inert, mechanically stretched polyacrylamide gels. At the onset of the thermal transition, uniform relative changes in RDC values indicate a uniform decrease of local N-HN and Calpha-Halpha order parameters for the hairpin strand residues. In contrast, near-turn residues show particular thermal stability in RDC values and hence in local order parameters. This coincides with increased transition temperatures of the beta-turn residues observed by chemical shifts. At high temperatures, the RDCs converge to non-zero average values consistent with predictions from random chain polymer models. Residue-specific deviations above the unfolding transition reveal the persistence of residual order around proline residues, large hydrophobic residues and at the beta-turn.
T4 纤维蛋白原(折叠子)的 C 末端结构域对于纤维蛋白原三聚体结构的形成是必不可少的,并且可以用作人工三聚化结构域。其天然结构由三聚体β-发夹螺旋桨组成。在低 pH 值下,折叠子三聚体分解为单体(A 态)形式,该形式具有与三聚体折叠途径早期中间体相似的性质。通过现代高分辨率核磁共振技术,已对该 A 态单体从三聚体的形成、其结构、热力学稳定性、平衡缔合和折叠动力学进行了原子水平的详细表征。折叠子 A 态单体形成一个具有完整且稳定氢键的β-发夹,与折叠子三聚体中的单体相似,但其 N 端和 C 端部分缺乏明确的结构。它在纯水中的热力学稳定性与在醇/水混合物中稳定的设计发夹相当。折叠子 A 态热解折叠的细节已通过在惰性、机械拉伸的聚丙烯酰胺凝胶中检测到的化学位移和剩余偶极耦合(RDC)进行了表征。在热转变开始时,RDC 值的均匀相对变化表明发夹链残基的局部 N-HN 和 Cα-Hα 序参数均匀降低。相比之下,近转角残基在 RDC 值以及因此在局部序参数方面表现出特殊的热稳定性。这与通过化学位移观察到的β-转角残基转变温度升高相一致。在高温下,RDC 收敛到与随机链聚合物模型预测一致的非零平均值。解折叠转变以上的残基特异性偏差揭示了脯氨酸残基、大的疏水残基以及β-转角周围残余序的持续性。