Weiss Manfred S, Mander Gerd, Hedderich Reiner, Diederichs Kay, Ermler Ulrich, Warkentin Eberhard
EMBL Hamburg Outstation, c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.
Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):686-95. doi: 10.1107/S0907444904003002. Epub 2004 Mar 23.
The structure of the 115 amino-acid residue protein DsvC was determined based on the anomalous scattering provided by the five S atoms present in the structure. By collecting the diffraction data at a wavelength of 1.9 A, the anomalous signal provided by the S atoms was enhanced. However, significant radiation damage occurred during the course of the experiment, which led to differences between different parts of the data set. Only by dividing the total data set into five data sets was it possible to obtain phases; these could then be successfully extended to allow structure determination by the automated model-building program ARP/wARP. A computational correction for the radiation damage was found to significantly improve the success rate in determining the heavy-atom substructure and to improve phasing and refinement statistics.
基于该结构中存在的5个硫原子提供的反常散射,确定了由115个氨基酸残基组成的蛋白质DsvC的结构。通过在1.9埃波长下收集衍射数据,增强了硫原子提供的反常信号。然而,在实验过程中发生了显著的辐射损伤,这导致数据集不同部分之间存在差异。只有将整个数据集划分为五个数据集才能获得相位;然后可以成功扩展这些相位,以便通过自动模型构建程序ARP/wARP进行结构测定。发现对辐射损伤进行计算校正可显著提高确定重原子子结构的成功率,并改善相位和精修统计。