• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自大肠杆菌的tRNA假尿苷合酶TruD的表达、纯化、结晶及初步衍射研究

Expression, purification, crystallization and preliminary diffraction studies of the tRNA pseudouridine synthase TruD from Escherichia coli.

作者信息

Ericsson Ulrika B, Andersson Martin E, Engvall Benita, Nordlund Pär, Hallberg B Martin

机构信息

Department of Biochemistry and Biophysics, Stockholm University, Roslagstullsbacken 15, SE-114 21 Stockholm, Sweden.

出版信息

Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):775-6. doi: 10.1107/S0907444904003506. Epub 2004 Mar 23.

DOI:10.1107/S0907444904003506
PMID:15039583
Abstract

Pseudouridine, the 5-ribosyl isomer of uridine, is the most common modification of structural RNA. The recently identified pseudouridine synthase TruD belongs to a widespread class of pseudouridine synthases without significant sequence homology to previously known families. TruD from Escherichia coli was overexpressed, purified and crystallized. The crystals diffract to a minimum Bragg spacing of 2.4 A and belong to space group P2(1)2(1)2(1), with unit-cell parameters a = 63.4, b = 108.6, c = 111.7 A.

摘要

假尿苷是尿苷的5-核糖基异构体,是结构RNA中最常见的修饰形式。最近鉴定出的假尿苷合酶TruD属于一类广泛存在的假尿苷合酶,与先前已知的家族没有明显的序列同源性。来自大肠杆菌的TruD被过量表达、纯化并结晶。晶体的衍射最小布拉格间距为2.4 Å,属于空间群P2(1)2(1)2(1),晶胞参数a = 63.4、b = 108.6、c = 111.7 Å。

相似文献

1
Expression, purification, crystallization and preliminary diffraction studies of the tRNA pseudouridine synthase TruD from Escherichia coli.来自大肠杆菌的tRNA假尿苷合酶TruD的表达、纯化、结晶及初步衍射研究
Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):775-6. doi: 10.1107/S0907444904003506. Epub 2004 Mar 23.
2
X-ray structure of tRNA pseudouridine synthase TruD reveals an inserted domain with a novel fold.转运RNA假尿苷合酶TruD的X射线结构揭示了一个具有新型折叠的插入结构域。
FEBS Lett. 2004 May 7;565(1-3):59-64. doi: 10.1016/j.febslet.2004.03.085.
3
Enzymatic characterization and mutational studies of TruD--the fifth family of pseudouridine synthases.TruD(假尿苷合酶的第五个家族)的酶学特性及突变研究
Arch Biochem Biophys. 2009 Sep;489(1-2):15-9. doi: 10.1016/j.abb.2009.07.023. Epub 2009 Aug 5.
4
Crystallization and characterization of a fragment of pseudouridine synthase RluC from Escherichia coli.来自大肠杆菌的假尿苷合酶RluC片段的结晶与表征
Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):302-4. doi: 10.1107/S090744499801021X. Epub 1999 Jan 1.
5
Purification, crystallization and preliminary X-ray analysis of the lytic transglycosylase MltA from Escherichia coli.来自大肠杆菌的溶菌转糖基酶MltA的纯化、结晶及初步X射线分析。
Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):758-60. doi: 10.1107/S0907444904002574. Epub 2004 Mar 23.
6
Purification and crystallization of Escherichia coli pseudouridine synthase RluD.大肠杆菌假尿苷合酶RluD的纯化与结晶
Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1871-3. doi: 10.1107/s0907444903018468. Epub 2003 Sep 19.
7
Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli.来自大肠杆菌的假尿苷合酶RluC和RluD催化结构域的晶体结构。
Biochemistry. 2004 Apr 20;43(15):4454-63. doi: 10.1021/bi036079c.
8
Domain organization and crystal structure of the catalytic domain of E.coli RluF, a pseudouridine synthase that acts on 23S rRNA.大肠杆菌RluF(一种作用于23S rRNA的假尿苷合酶)催化结构域的结构域组织和晶体结构。
J Mol Biol. 2006 Jun 16;359(4):998-1009. doi: 10.1016/j.jmb.2006.04.019. Epub 2006 Apr 25.
9
Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.假尿苷合酶RluA的晶体结构:通过蛋白质诱导的RNA结构进行间接序列识别
Mol Cell. 2006 Nov 17;24(4):535-45. doi: 10.1016/j.molcel.2006.09.017.
10
Crystal structure of TruD, a novel pseudouridine synthase with a new protein fold.
J Biol Chem. 2004 Apr 30;279(18):18107-10. doi: 10.1074/jbc.C400072200. Epub 2004 Mar 3.

引用本文的文献

1
The human pseudouridine synthase PUS7 recognizes RNA with an extended multi-domain binding surface.人类假尿嘧啶核苷合成酶 PUS7 通过扩展的多结构域结合表面识别 RNA。
Nucleic Acids Res. 2021 Nov 18;49(20):11810-11822. doi: 10.1093/nar/gkab934.
2
Discovery, properties, and biosynthesis of pseudouridimycin, an antibacterial nucleoside-analog inhibitor of bacterial RNA polymerase.假尿嘧啶核苷霉素的发现、性质和生物合成,一种抑制细菌 RNA 聚合酶的抗菌核苷类似物抑制剂。
J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):335-343. doi: 10.1007/s10295-018-2109-2. Epub 2018 Nov 21.
3
Analysis of the Pseudouridimycin Biosynthetic Pathway Provides Insights into the Formation of C-nucleoside Antibiotics.
假尿嘧啶核苷生物合成途径分析为 C-核苷抗生素的形成提供了线索。
Cell Chem Biol. 2018 May 17;25(5):540-549.e4. doi: 10.1016/j.chembiol.2018.02.008. Epub 2018 Mar 15.
4
Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold.高度分化的假尿苷合酶TruD的晶体结构揭示了一种保守折叠的环状排列。
RNA. 2004 Jul;10(7):1026-33. doi: 10.1261/rna.7240504.