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哺乳动物热休克蛋白70(Hsp70)中的基因转换与GC含量进化

Gene conversion and GC-content evolution in mammalian Hsp70.

作者信息

Kudla Grzegorz, Helwak Aleksandra, Lipinski Leszek

机构信息

International Institute of Molecular and Cell Biology, Warsaw, Poland.

出版信息

Mol Biol Evol. 2004 Jul;21(7):1438-44. doi: 10.1093/molbev/msh146. Epub 2004 Apr 14.

Abstract

To investigate the mechanisms regulating the nucleotide usage in mammalian genes, we analyzed the sequences of three physically linked Hsp70 paralogs in human and mouse. We report that the sequences of HSPA1A and HSPA1B genes are almost identical, whereas the HSPA1L gene contains some regions very similar to HSPA1A/B and some regions with much higher divergence. Phylogenetic analysis reveals that gene conversion has homogenized the entire coding regions of HSPA1A/B and several fragments of HSPA1L. The regions undergoing conversion are all very GC rich, contrarily to the regions not subject to conversion. The pattern of nucleotide substitution in mammalian orthologs suggests that the mechanism increasing the GC content is still functioning. To test the possibility that the high GC content facilitates the expression of Hsp70 during heat-shock, we performed in vitro translation experiments. We failed to detect any effect of GC content on the translation efficiency at high temperatures. Taken together, our data strongly support the biased gene conversion hypothesis of GC-content evolution.

摘要

为了研究调控哺乳动物基因中核苷酸使用的机制,我们分析了人类和小鼠中三个物理连锁的热休克蛋白70(Hsp70)旁系同源基因的序列。我们报告称,热休克蛋白家族A成员1A(HSPA1A)基因和热休克蛋白家族A成员1B(HSPA1B)基因的序列几乎相同,而热休克蛋白家族A成员1L(HSPA1L)基因包含一些与HSPA1A/B非常相似的区域以及一些差异大得多的区域。系统发育分析表明,基因转换使HSPA1A/B的整个编码区以及HSPA1L的几个片段同质化。与未发生转换的区域相反,发生转换的区域都富含GC。哺乳动物直系同源基因中的核苷酸替代模式表明,增加GC含量的机制仍在起作用。为了测试高GC含量是否有助于热休克期间Hsp70的表达,我们进行了体外翻译实验。我们未能检测到GC含量对高温下翻译效率的任何影响。综上所述,我们的数据有力地支持了GC含量进化的偏向基因转换假说。

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