Toyama Akira, Takahashi Yohko, Takeuchi Hideo
Graduate School of Pharmaceutical Sciences, Tohoku University, Aobayama, Sendai 980-8578, Japan.
Biochemistry. 2004 Apr 27;43(16):4670-9. doi: 10.1021/bi049767k.
Cu-Zn superoxide dismutase (SOD) contains a conserved, metal-free His residue at an opening of the backbone beta-barrel in addition to six Cu- and/or Zn-bound His residues in the active site. We examined the protonation and hydrogen bonding state of the metal-free His residue (His41) in bovine SOD by UV Raman spectroscopy. Analysis of the His Raman intensity at 1406 cm(-1) in a D2O solution has shown that His41 has a pKa of 9.4, consistent with the NMR and X-ray structures at acidic to neutral pH, in which two imidazole nitrogen atoms of cationic His41 are hydrogen bonded to the main chain C=O groups of Thr37 and His118. Upon deprotonation of His41 at pH 9.4, the Thr37-His41-His118 hydrogen bond bridge breaks on the His118 side and SOD loses 70% of its activity. Concomitantly, hydrogen-deuterium exchange is accelerated for amide groups of beta-strands, indicating an increased conformational fluctuation of the beta-barrel. Thr37 and His41 are in direct contact with Leu36, whose hydrophobic side chain closes off the opening of the beta-barrel, while His118 is indirectly connected to Arg141 that assists the docking of superoxide to Cu. These Raman findings strongly suggest that the His41-mediated hydrogen bond bridge plays a crucial role in keeping the protein structure suitable for highly efficient catalytic reactions. The catalytic and structural role of His41 is consistent with the observation that the mutation of His43 in human SOD (equivalent to His41 in bovine SOD) to Arg largely reduces the dismutase activity and the protein structural stability.
铜锌超氧化物歧化酶(SOD)除了在活性位点含有六个与铜和/或锌结合的组氨酸残基外,在主链β-桶的开口处还含有一个保守的无金属组氨酸残基。我们通过紫外拉曼光谱研究了牛SOD中无金属组氨酸残基(His41)的质子化和氢键状态。对D2O溶液中1406 cm(-1)处组氨酸拉曼强度的分析表明,His41的pKa为9.4,这与酸性至中性pH下的核磁共振和X射线结构一致,其中阳离子His41的两个咪唑氮原子与Thr37和His118的主链C=O基团形成氢键。在pH 9.4时His41去质子化后,Thr37-His41-His118氢键桥在His118一侧断裂,SOD失去70%的活性。同时,β-链酰胺基团的氢-氘交换加速,表明β-桶的构象波动增加。Thr37和His41与Leu36直接接触,Leu36的疏水侧链封闭了β-桶的开口,而His118与协助超氧化物与铜对接的Arg141间接相连。这些拉曼研究结果强烈表明,His41介导的氢键桥在保持蛋白质结构适合高效催化反应方面起着关键作用。His41的催化和结构作用与以下观察结果一致:人SOD中His43(相当于牛SOD中的His41)突变为Arg会大大降低歧化酶活性和蛋白质结构稳定性。