与一氧化碳脱氢酶的C簇相关的镍-铁-硫簇中四面体镍(II)到平面镍(II)的初始结构修饰。
Initial structure modification of tetrahedral to planar nickel(II) in a nickel-iron-sulfur cluster related to the C-cluster of carbon monoxide dehydrogenase.
作者信息
Panda Rashmishree, Zhang Yugen, McLauchlan Craig C, Venkateswara Rao P, Tiago de Oliveira F A, Münck E, Holm R H
机构信息
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
出版信息
J Am Chem Soc. 2004 May 26;126(20):6448-59. doi: 10.1021/ja030627s.
A method has been devised that creates a planar Ni(II) site from a tetrahedral site in a NiFe(3)S(4) cubane-type cluster. Reaction of (Ph(3)P)NiFe(3)S(4)(LS(3))(-) (2) with 1,2-bis(dimethylphosphino)ethane affords (dmpe)NiFe(3)S(4)(LS(3))(-) (3), isolated in ca. 45% yield as (Et(4)N)(2)[3a].2.5MeCN and (Et(4)N)(2)[3b].0.25MeCN, both of which occur in triclinic space group P. Each crystalline form contains two crystallographically inequivalent clusters with the same overall structure but slightly different dimensions. The cluster is bound by three thiolate terminal ligands to semirigid cavitand ligand LS(3). The NiFe(3)S(4) core contains three tetrahedral sites, one Fe(micro(3)-S)(3)(SR) and two Fe(micro(3)-S)(2)(micro(2)-S)(SR) with normal metric features, and one distorted square planar Ni(micro(3)-S)(2)P(2) site in a Ni(micro(3)-S)(2)Fe face with mean bond lengths Ni-P = 2.147(9) A and Ni-S = 2.29(2) A. The opposite Fe(2)(micro(3)-S)(micro(2)-S) face places the micro(2)-S atom at nonbonding and variable distances (2.60-2.90 A) above the nickel atom. Binding of the strong-field ligand dmpe results in a planar Ni(II) site and deconstruction of the full cubane geometry. The structure approximates that established crystallographically in the C-cluster of C. hydrogenoformans carbon monoxide dehydrogenase whose NiFe(4)S(4) core contains a planar NiS(4) site and three tetrahedral FeS(4) sites in a fragment that is bridged by sulfide atoms to an exo iron atom. Mössbauer studies of polycrystalline samples containing both clusters 3a and 3b reveal the presence of at least two cluster types. The spectroscopically best defined cluster accounts for ca. 54% of total iron and exhibits hyperfine interactions quite similar to those reported for the S = (5)/(2) state of the protein-bound cubane-type cluster ZnFe(3)S(4), whose Mössbauer spectrum revealed the presence of a high-spin Fe(2+) site and a delocalized Fe(2.5+)Fe(2.5+) pair. Development of reactions leading to a planar nickel and a sulfide-bridged iron atom is requisite to attainment of a synthetic analogue of this complex protein-bound cluster. This work demonstrates a tetrahedral (2) --> planar (3) Ni(II) stereochemical conversion can be effected by binding of ligands that generate a sufficiently strong in-plane ligand field (dmpe = 1,2-bis(dimethylphosphino)ethane, LS(3) = 1,3,5-tris((4,6-dimethyl-3-mercaptophenyl)thio)-2,4,6-tris(p-tolylthio)benzene(3-)).
已设计出一种方法,可将NiFe(3)S(4)立方烷型簇中的四面体位点转化为平面Ni(II)位点。(Ph(3)P)NiFe(3)S(4)(LS(3))(-)(2)与1,2 - 双(二甲基膦基)乙烷反应得到(dmpe)NiFe(3)S(4)(LS(3))(-)(3),以(Et(4)N)(2)[3a].2.5MeCN和(Et(4)N)(2)[3b].0.25MeCN的形式分离得到,产率约为45%,二者均属于三斜空间群P。每种晶体形式都包含两个晶体学上不等价的簇,它们具有相同的整体结构,但尺寸略有不同。该簇由三个硫醇盐末端配体与半刚性穴状配体LS(3)结合。NiFe(3)S(4)核心包含三个四面体位点,一个Fe(μ(3)-S)(3)(SR)和两个Fe(μ(3)-S)(2)(μ(2)-S)(SR),具有正常的度量特征,以及一个扭曲的平面正方形Ni(μ(3)-S)(2)P(2)位点,位于Ni(μ(3)-S)(2)Fe面中,平均键长Ni - P = 2.147(9) Å,Ni - S = 2.29(2) Å。相对的Fe(2)(μ(3)-S)(μ(2)-S)面使μ(2)-S原子在镍原子上方处于非键合且可变的距离(2.60 - 2.90 Å)。强场配体dmpe的结合导致平面Ni(II)位点的形成以及完整立方烷几何结构的解构。该结构近似于在嗜氢甲烷菌一氧化碳脱氢酶的C - 簇中晶体学确定的结构,其NiFe(4)S(4)核心在一个由硫原子桥连到外部铁原子的片段中包含一个平面NiS(4)位点和三个四面体FeS(4)位点。对同时含有簇3a和3b的多晶样品的穆斯堡尔研究表明至少存在两种簇类型。光谱定义最清晰的簇约占总铁的54%,并且表现出与报道的蛋白质结合的立方烷型簇ZnFe(3)S(4)的S = (5)/(2)态非常相似的超精细相互作用,其穆斯堡尔光谱显示存在一个高自旋Fe(2+)位点和一个离域的Fe(2.5+)Fe(2.5+)对。开发导致平面镍和硫桥连铁原子的反应对于获得这种复杂的蛋白质结合簇的合成类似物是必要的。这项工作表明,四面体(2)→平面(3)Ni(II)立体化学转化可以通过结合产生足够强的面内配体场的配体来实现(dmpe = 1,2 - 双(二甲基膦基)乙烷,LS(3) = 1,3,5 - 三((4,6 - 二甲基 - 3 - 巯基苯基)硫代)- 2,4,6 - 三(对甲苯硫代)苯(3 - ))。