Segall Mark L, Colman Roberta F
Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.
Biochemistry. 2004 Jun 15;43(23):7391-402. doi: 10.1021/bi0494774.
In adenylosuccinate lyase from Bacillus subtilis, Gln(212), Asn(270), and Arg(301) are conserved and located close to the succinyl moiety of docked adenylosuccinate. We constructed mutant enzymes with Gln(212) replaced by Glu and Met, Asn(270) by Asp and Leu, and Arg(301) by Gln or Lys. The wild-type and mutant enzymes were expressed in Escherichia coli and purified to homogeneity. The specific activities of the Q212M and the 270 and 301 mutant enzymes were decreased more than 3000-fold as compared to the wild type. Only Q212E retained sufficient activity for determination of its kinetic parameters: V(max) was decreased approximately 1000-fold, and K(m) was increased 6-fold, as compared to the wild-type enzyme. Adenylosuccinate binding studies of the other mutants revealed greatly weakened affinities that contributed to, but did not account entirely for, the loss of activity. These mutant enzymes did not differ greatly from the wild-type enzyme in secondary structure or subunit association state, as shown by circular dichroism spectroscopy and light-scattering photometry. Incubation of pairs of inactive mutant enzymes led to reconstitution of some functional sites by subunit complementation, with recovery of up to 25% of the specific activity of the wild-type enzyme. Subunit complementation occurs only if the two mutations are contributed to the active site by different subunits. Thus, mixing Q212E with N270L enzyme yielded a specific activity of approximately 20% of the wild-type enzyme, while mixing Q212M with R301K enzyme did not restore activity. As supported by computer modeling, the studies presented here indicate that Gln(212), Asn(270), and Arg(301) are indispensable to catalysis by adenylosuccinate lyase and probably interact noncovalently with the carboxylate anions of the substrates 5-aminoimidazole-4(N-succinylocarboxamide)ribonucleotide and adenylosuccinate, optimizing their bound orientations.
在枯草芽孢杆菌的腺苷酸琥珀酸裂解酶中,Gln(212)、Asn(270)和Arg(301)是保守的,且位于对接的腺苷酸琥珀酸的琥珀酰部分附近。我们构建了突变酶,将Gln(212)分别替换为Glu和Met,将Asn(270)分别替换为Asp和Leu,将Arg(301)分别替换为Gln或Lys。野生型和突变型酶在大肠杆菌中表达并纯化至均一。与野生型相比,Q212M以及270和301突变型酶的比活性降低了3000多倍。只有Q212E保留了足够的活性来测定其动力学参数:与野生型酶相比,V(max)降低了约1000倍,K(m)增加了6倍。对其他突变体的腺苷酸琥珀酸结合研究表明,亲和力大大减弱,这是活性丧失的部分原因,但并非完全原因。如圆二色光谱和光散射光度法所示,这些突变酶在二级结构或亚基缔合状态方面与野生型酶没有很大差异。将无活性的突变酶对进行孵育,通过亚基互补导致一些功能位点的重构,恢复了高达野生型酶比活性的25%。只有当两个突变由不同亚基贡献给活性位点时,亚基互补才会发生。因此,将Q212E与N270L酶混合产生的比活性约为野生型酶的20%,而将Q212M与R301K酶混合则不能恢复活性。正如计算机建模所支持的,此处的研究表明,Gln(212)、Asn(270)和Arg(301)对于腺苷酸琥珀酸裂解酶的催化作用不可或缺,并且可能与底物5-氨基咪唑-4(N-琥珀酰羧酰胺)核糖核苷酸和腺苷酸琥珀酸的羧酸根阴离子非共价相互作用,优化它们的结合方向。