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抗坏血酸过氧化物酶-水杨羟肟酸复合物的晶体结构

Crystal structure of the ascorbate peroxidase-salicylhydroxamic acid complex.

作者信息

Sharp Katherine H, Moody Peter C E, Brown Katherine A, Raven Emma Lloyd

机构信息

Department of Chemistry, University of Leicester, UK.

出版信息

Biochemistry. 2004 Jul 13;43(27):8644-51. doi: 10.1021/bi049343q.

Abstract

Ascorbate peroxidase is a bifunctional peroxidase that catalyzes the H(2)O(2)-dependent oxidation of both ascorbate and various aromatic substrates. The ascorbate binding site was recently identified as being close to the gamma-heme edge [Sharp, K. H., Mewies, M., Moody, P. C. E., and Raven, E. L. (2003)Nat. Struct. Biol. 10, 303-307]. In this work, the X-ray crystal structure of recombinant soybean cytosolic ascorbate peroxidase (rsAPX) in complex with salicylhydroxamic acid (SHA) has been determined to 1.46 A. The SHA molecule is bound close to the delta-heme edge in a cavity that connects the distal side of the heme to the surface of the protein. There are hydrogen bonds between the phenolic hydroxide of the SHA and the main chain carbonyl of Pro132, between the carbonyl oxygen of SHA and the side chain guanadinium group of Arg38, and between the hydroxamic acid group and the indole nitrogen of Trp41. The structure provides the first information about the location of the aromatic binding site in ascorbate peroxidase and, together with our previous data [Sharp, K. H., et al. (2003) Nat. Struct. Biol. 10, 303-307], completes the structural description of the binding properties of ascorbate peroxidase. The mechanistic implications of the results are discussed in terms of our current understanding of how APX catalyzes oxidation of different types of substrates bound at different locations.

摘要

抗坏血酸过氧化物酶是一种双功能过氧化物酶,可催化抗坏血酸和各种芳香族底物的H(2)O(2)依赖性氧化。最近发现抗坏血酸结合位点靠近γ-血红素边缘[Sharp, K. H., Mewies, M., Moody, P. C. E., and Raven, E. L. (2003)Nat. Struct. Biol. 10, 303 - 307]。在这项工作中,已确定重组大豆胞质抗坏血酸过氧化物酶(rsAPX)与水杨羟肟酸(SHA)复合物的X射线晶体结构分辨率为1.46 Å。SHA分子结合在靠近δ-血红素边缘的一个腔中,该腔将血红素的远端与蛋白质表面相连。SHA的酚羟基与Pro132的主链羰基之间、SHA的羰基氧与Arg38的侧链胍基之间以及异羟肟酸基团与Trp41的吲哚氮之间存在氢键。该结构提供了关于抗坏血酸过氧化物酶中芳香族结合位点位置的首个信息,并与我们之前的数据[Sharp, K. H., et al. (2003) Nat. Struct. Biol. 10, 303 - 307]一起,完成了对抗坏血酸过氧化物酶结合特性的结构描述。根据我们目前对抗坏血酸过氧化物酶(APX)如何催化在不同位置结合的不同类型底物氧化的理解,讨论了这些结果的机制意义。

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