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巴氏脱硫弧菌超氧化物还原酶活性位点中异常高自旋侧接过氧-Fe3+物种的穆斯堡尔表征。相关模型的密度泛函计算。

Mössbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models.

作者信息

Horner Olivier, Mouesca Jean-Marie, Oddou Jean-Louis, Jeandey Claudine, Nivière Vincent, Mattioli Tony A, Mathé Christelle, Fontecave Marc, Maldivi Pascale, Bonville Pierre, Halfen Jason A, Latour Jean-Marc

机构信息

Département Réponse et Dynamique Cellulaires, Laboratoire de Physicochimie des Métaux en Biologie, UMR CEA/CNRS/Université Joseph Fourier 5155, France.

出版信息

Biochemistry. 2004 Jul 13;43(27):8815-25. doi: 10.1021/bi0498151.

Abstract

Superoxide reductase (SOR) is an Fe protein that catalyzes the reduction of superoxide to give H(2)O(2). Recently, the mutation of the Glu47 residue into alanine (E47A) in the active site of SOR from Desulfoarculus baarsii has allowed the stabilization of an iron-peroxo species when quickly reacted with H(2)O(2) [Mathé et al. (2002) J. Am. Chem. Soc. 124, 4966-4967]. To further investigate this non-heme peroxo-iron species, we have carried out a Mössbauer study of the (57)Fe-enriched E47A SOR from D. baarsii reacted quickly with H(2)O(2). Considering the Mössbauer data, we conclude, in conjunction with the other spectroscopic data available and with the results of density functional calculations on related models, that this species corresponds to a high-spin side-on peroxo-Fe(3+) complex. This is one of the first examples of such a species in a biological system for which Mössbauer parameters are now available: delta(/Fe) = 0.54 (1) mm/s, DeltaE(Q) = -0.80 (5) mm/s, and the asymmetry parameter eta = 0.60 (5) mm/s. The Mössbauer and spin Hamiltonian parameters have been evaluated on a model from the side-on peroxo complex (model 2) issued from the oxidized iron center in SOR from Pyrococcus furiosus, for which structural data are available in the literature [Yeh et al. (2000) Biochemistry 39, 2499-2508]. For comparison, similar calculations have been carried out on a model derived from 2 (model 3), where the CH(3)-S(-) group has been replaced by the neutral NH(3) group [Neese and Solomon (1998) J. Am. Chem. Soc. 120, 12829-12848]. Both models 2 and 3 contain a formally high-spin Fe(3+) ion (i.e., with empty minority spin orbitals). We found, however, a significant fraction ( approximately 0.6 for 2, approximately 0.8 for 3) of spin (equivalently charge) spread over two occupied (minority spin) orbitals. The quadrupole splitting value for 2 is found to be negative and matches quite well the experimental value. The computed quadrupole tensors are rhombic in the case of 2 and axial in the case of 3. This difference originates directly from the presence of the thiolate ligand in 2. A correlation between experimental isomer shifts for Fe(3+) mononuclear complexes with computed electron densities at the iron nucleus has been built and used to evaluate the isomer shift values for 2 and 3 (0.56 and 0.63 mm/s, respectively). A significant increase of isomer shift value is found upon going from a methylthiolate to a nitrogen ligand for the Fe(3+) ion, consistent with covalency effects due to the presence of the axial thiolate ligand. Considering that the isomer shift value for 3 is likely to be in the 0.61-0.65 mm/s range [Horner et al. (2002) Eur. J. Inorg. Chem., 3278-3283], the isomer shift value for a high-spin eta(2)-O(2) Fe(3+) complex with an axial thiolate group can be estimated to be in the 0.54-0.58 mm/s range. The occurrence of a side-on peroxo intermediate in SOR is discussed in relation to the recent data published for a side-on peroxo-Fe(3+) species in another biological system [Karlsson et al. (2003) Science 299, 1039-1042].

摘要

超氧化物还原酶(SOR)是一种铁蛋白,它催化超氧化物还原生成H₂O₂。最近,巴氏脱硫弧菌(Desulfoarculus baarsii)的SOR活性位点上的Glu47残基突变为丙氨酸(E47A)后,与H₂O₂快速反应时能使一种铁过氧物种得以稳定[马泰等人(2002年),《美国化学会志》124卷,4966 - 4967页]。为了进一步研究这种非血红素过氧铁物种,我们对富集了⁵⁷Fe的巴氏脱硫弧菌E47A SOR与H₂O₂快速反应后的样品进行了穆斯堡尔谱研究。结合穆斯堡尔谱数据,以及现有的其他光谱数据和相关模型的密度泛函计算结果,我们得出结论,该物种对应于一种高自旋侧基过氧 - Fe³⁺配合物。这是生物系统中此类物种的首批实例之一,现在已有其穆斯堡尔参数:δ(⁵⁷Fe) = 0.54(1) mm/s,ΔE(Q) = -0.80(5) mm/s,不对称参数η = 0.60(5) mm/s。穆斯堡尔谱和自旋哈密顿参数已在源自嗜热栖热菌(Pyrococcus furiosus)SOR中氧化态铁中心的侧基过氧配合物(模型2)的模型上进行了评估,文献中已有该配合物的结构数据[叶等人(2000年),《生物化学》39卷,2499 - 2508页]。为作比较,对源自模型2的一个模型(模型3)进行了类似计算,其中[CH₃ - S]⁻基团被中性的[NH₃]⁰基团取代[内斯和所罗门(1998年),《美国化学会志》120卷,12829 - 12848页]。模型2和模型3都包含一个形式上的高自旋Fe³⁺离子(即少数自旋轨道为空)。然而,我们发现相当一部分自旋(等效于电荷)分布在两个占据的(少数自旋)轨道上(模型2约为0.6,模型3约为0.8)。发现模型2的四极分裂值为负,且与实验值相当吻合。计算得到的四极张量在模型2的情况下是菱形的,在模型3的情况下是轴向的。这种差异直接源于模型2中存在硫醇盐配体。已建立了Fe³⁺单核配合物的实验同质异能位移与铁原子核处计算得到的电子密度之间的相关性,并用于评估模型2和模型3的同质异能位移值(分别为0.56和0.63 mm/s)。对于Fe³⁺离子,从甲硫醇盐配体变为氮配体时,同质异能位移值显著增加,这与轴向硫醇盐配体存在导致的共价效应一致。考虑到模型3的同质异能位移值可能在0.61 - 0.65 mm/s范围内[霍纳等人(2002年),《欧洲无机化学杂志》,3278 - 3283页],具有轴向硫醇盐基团的高自旋η² - O₂ Fe³⁺配合物的同质异能位移值可估计在0.54 - 0.58 mm/s范围内。结合另一个生物系统中关于侧基过氧 - Fe³⁺物种的最新数据[卡尔松等人(2003年),《科学》299卷,1039 - 1042页],讨论了SOR中侧基过氧中间体的出现情况。

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