Nadarajah A, Pusey M L
Department of Chemical and Materials Engineering, University of Alabama in Huntsville, 35899, USA.
Acta Crystallogr D Biol Crystallogr. 1996 Sep 1;52(Pt 5):983-96. doi: 10.1107/S0907444996004532.
The tetragonal form of hen egg-white lysozyme is the most investigated protein crystal for growth studies, but the relationship between its surface morphology and internal structure is still not well understood. One method of determining this relationship for inorganic crystals is by employing the periodic bond chain (PBC) theory of Hartman & Perdok [Hartman & Perdok (1955). Acta Cryst. 8, 49-52, 521-524, 525-529]. However, complexities resulting from the packing arrangements and the number of intermolecular bonds in protein crystals have resulted in the use of only simplified versions of this theory so far. In this study a more complete PBC analysis of tetragonal lysozyme crystals was carried out, coupled with an approach incorporating the molecular orientations of the crystal structure. The analysis revealed the existence of a helical tetramer building block of the entire crystal structure, centered around the 4(3) crystallographic axes, resulting in double-layered slices and PBC's throughout. The analysis also indicated that the crystallizing units for the faces are at least as large as this tetramer, with the experimental evidence suggesting that it is a tetramer unit for the {101} faces and an octamer unit for the {110} faces. The {110} faces were shown to be molecularly smooth F faces, while the {101} to be essentially rough S faces. The predicted morphology and growth mechanisms were found to explain numerous experimental observations from electron and atomic force microscopy, etching studies, lysozyme aggregation studies and measurements of growth kinetics.
蛋清溶菌酶的四方晶型是生长研究中研究最多的蛋白质晶体,但人们对其表面形态与内部结构之间的关系仍未完全理解。确定无机晶体这种关系的一种方法是采用哈特曼和佩尔多克的周期键链(PBC)理论[哈特曼和佩尔多克(1955年)。《晶体学报》8卷,49 - 52页,521 - 524页,525 - 529页]。然而,由于蛋白质晶体中的堆积排列和分子间键数量所导致的复杂性,使得迄今为止该理论仅使用了简化版本。在本研究中,对四方溶菌酶晶体进行了更完整的PBC分析,并结合了一种纳入晶体结构分子取向的方法。分析揭示了整个晶体结构中存在一个围绕4(3)晶轴的螺旋四聚体构建块,从而形成贯穿始终的双层薄片和PBC。分析还表明,晶面的结晶单元至少与这个四聚体一样大,实验证据表明,对于{101}面它是一个四聚体单元,对于{110}面是一个八聚体单元。结果表明,{110}面是分子光滑的F面,而{101}面基本上是粗糙的S面。发现预测的形态和生长机制能够解释来自电子显微镜、原子力显微镜、蚀刻研究、溶菌酶聚集研究以及生长动力学测量的大量实验观察结果。