Woolfson M M, Jia-Xing Y, Hai-Fu F
Department of Physics, University of York, England.
Acta Crystallogr D Biol Crystallogr. 1997 Nov 1;53(Pt 6):673-81. doi: 10.1107/S0907444997006884.
A computer package ANOMIR is described which can derive phases from anomalous scattering and/or isomorphous-replacement data in any combination. For anomalous scattering it incorporates five methods of applying one-wavelength data and three methods for multiple-wavelength data including SPIN, reported here for the first time. In addition there are three procedures for multiple-wavelength data - the first modifying data for different wavelengths to make them mutually consistent, the second estimating the contributions of the anomalous scatterers alone and the third which finds anomalous differences. For single isomorphous replacement or one-wavelength anomalous scattering the phase ambiguity can be resolved by the direct method [Fan, Han, Qian & Yao (1984). Acta Cryst. A40, 489- 495] but for multiple isomorphous replacement the main method is an adaptation of the probability-curve method [Blow & Crick (1959). Acta Cryst. 12, 794-802]. A new statistical method is described for estimating the standard error in measuring magnitudes which is independent of having subsets of centric reflections. A method is described whereby the weights associated with phase estimates are used to generate probability curves, through which it is possible to combine estimates from different methods and to produce a 'best phase' and figure-of-merit for every reflection. ANOMIR procedures are also available for handling combinations of one-wavelength anomalous scattering with single- or multiple-isomorphous replacement. A final process, which is always beneficial, is a single parallel application of the tangent formula. The ANOMIR package has been designed for easy use and is controlled throughout by KEYWORDS. Results for several structures are given and compared with those found from the MLPHARE program in the CCP4 package.
介绍了一种计算机程序包ANOMIR,它可以从反常散射和/或同晶置换数据中以任何组合方式推导相位。对于反常散射,它包含五种应用单波长数据的方法和三种处理多波长数据的方法,包括首次在此报道的SPIN方法。此外,还有三种处理多波长数据的程序——第一种是修改不同波长的数据使其相互一致,第二种是单独估计反常散射体的贡献,第三种是找出反常差异。对于单同晶置换或单波长反常散射,相位模糊度可以通过直接法解决[Fan, Han, Qian & Yao (1984). Acta Cryst. A40, 489 - 495],但对于多重同晶置换,主要方法是对概率曲线法的一种改进[Blow & Crick (1959). Acta Cryst. 12, 794 - 802]。描述了一种新的统计方法,用于估计测量强度时的标准误差,该方法与是否有中心反射子集无关。描述了一种方法,通过该方法与相位估计相关的权重用于生成概率曲线,借此可以组合来自不同方法的估计,并为每个反射生成一个“最佳相位”和品质因数。ANOMIR程序也可用于处理单波长反常散射与单同晶置换或多重同晶置换的组合。最后一个总是有益的过程是对切线公式进行单次并行应用。ANOMIR程序包设计得易于使用,并且全程由关键词控制。给出了几个结构的结果,并与CCP4程序包中的MLPHARE程序得到的结果进行了比较。