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一种将直接法与溶剂扁平化相结合的新迭代程序——解决蛋白质晶体学中的相位模糊问题。

A new iterative procedure for combining direct methods with solvent flattening - dealing with the phase ambiguity in protein crystallography.

作者信息

Gu Y, Zheng C, Zhao Y, Ke H, Fan H

机构信息

Institute of Physics, Chinese Academy of Science, Beijing, People's Republic of China.

出版信息

Acta Crystallogr D Biol Crystallogr. 1997 Nov 1;53(Pt 6):792-4. doi: 10.1107/S090744499700680X.

Abstract

A new procedure for combining direct methods with the solvent-flattening technique is proposed for phasing single isomorphous replacement (SIR) or one-wavelength anomalous scattering (OAS) data of proteins. The new procedure differs from the previous one [Zheng, Zheng, Gu, Mo, Fan & Hao (1997). Acta Cryst. D53, 49-55] in that the direct method not only provides input phases to but also accepts feedback phases from solvent flattening, thus forming an iterative process for breaking the ambiguities and refining the values of phases. The new procedure was tested with the experimental SIR data of the known structure ribonuclease Sa. For the strongest 1000 of the total 7264 reflections, the mean F(obs)-weighted phase error is 7.5 and 9.4 degrees lower than that of the previous procedure and that of solvent flattening alone, respectively.

摘要

提出了一种将直接法与溶剂扁平化技术相结合的新方法,用于解析蛋白质的单同晶置换(SIR)或单波长反常散射(OAS)数据的相位。新方法与之前的方法[Zheng, Zheng, Gu, Mo, Fan & Hao (1997). Acta Cryst. D53, 49 - 55]不同之处在于,直接法不仅为溶剂扁平化提供输入相位,还接受来自溶剂扁平化的反馈相位,从而形成一个用于消除相位模糊和精修相位值的迭代过程。用已知结构的核糖核酸酶Sa的实验SIR数据对新方法进行了测试。对于总共7264个反射中最强的1000个反射,平均F(obs)加权相位误差分别比之前的方法和单独的溶剂扁平化方法低7.5度和9.4度。

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