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大肠杆菌OpgG的结构分析,OpgG是渗透调节周质葡聚糖生物合成所需的一种蛋白质。

Structural analysis of Escherichia coli OpgG, a protein required for the biosynthesis of osmoregulated periplasmic glucans.

作者信息

Hanoulle Xavier, Rollet Eglantine, Clantin Bernard, Landrieu Isabelle, Odberg-Ferragut Carmen, Lippens Guy, Bohin Jean-Pierre, Villeret Vincent

机构信息

UMR 8525 CNRS, Institut de Biologie de Lille, Université de Lille II, 1 rue du Professeur Calmette, BP447, 59021, France.

出版信息

J Mol Biol. 2004 Sep 3;342(1):195-205. doi: 10.1016/j.jmb.2004.07.004.

Abstract

Osmoregulated periplasmic glucans (OPGs) G protein (OpgG) is required for OPGs biosynthesis. OPGs from Escherichia coli are branched glucans, with a backbone of beta-1,2 glucose units and with branches attached by beta-1,6 linkages. In Proteobacteria, OPGs are involved in osmoprotection, biofilm formation, virulence and resistance to antibiotics. Despite their important biological implications, enzymes synthesizing OPGs are poorly characterized. Here, we report the 2.5 A crystal structure of OpgG from E.coli. The structure was solved using a selenemethionine derivative of OpgG and the multiple anomalous diffraction method (MAD). The protein is composed of two beta-sandwich domains connected by one turn of 3(10) helix. The N-terminal domain (residues 22-388) displays a 25-stranded beta-sandwich fold found in several carbohydrate-related proteins. It exhibits a large cleft comprising many aromatic and acidic residues. This putative binding site shares some similarities with enzymes such as galactose mutarotase and glucodextranase, suggesting a potential catalytic role for this domain in OPG synthesis. On the other hand, the C-terminal domain (residues 401-512) has a seven-stranded immunoglobulin-like beta-sandwich fold, found in many proteins where it is mainly implicated in interactions with other molecules. The structural data suggest that OpgG is an OPG branching enzyme in which the catalytic activity is located in the large N-terminal domain and controlled via the smaller C-terminal domain.

摘要

渗透调节周质葡聚糖(OPGs)的生物合成需要G蛋白(OpgG)。大肠杆菌的OPGs是分支葡聚糖,其主链由β-1,2葡萄糖单元组成,分支通过β-1,6连接相连。在变形菌门中,OPGs参与渗透保护、生物膜形成、毒力及抗生素抗性。尽管它们具有重要的生物学意义,但合成OPGs的酶却鲜有特征描述。在此,我们报道了大肠杆菌OpgG的2.5埃晶体结构。该结构通过OpgG的硒代甲硫氨酸衍生物及多波长反常散射法(MAD)解析得出。该蛋白由两个β-折叠结构域组成,通过一圈3(10)螺旋相连。N端结构域(残基22 - 388)呈现出在几种碳水化合物相关蛋白中发现的25股β-折叠结构。它具有一个包含许多芳香族和酸性残基的大裂隙。这个假定的结合位点与诸如半乳糖变旋酶和葡糖右旋糖酐酶等酶有一些相似之处,表明该结构域在OPG合成中可能具有催化作用。另一方面,C端结构域(残基401 - 512)具有七股免疫球蛋白样β-折叠结构,在许多蛋白中该结构主要参与与其他分子的相互作用。结构数据表明,OpgG是一种OPG分支酶,其催化活性位于较大的N端结构域,并通过较小的C端结构域进行调控。

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