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分子拥挤对小分子溶质和大分子扩散的降低程度相似:通过荧光相关光谱法进行测量。

Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: measurement by fluorescence correlation spectroscopy.

作者信息

Dauty Emmanuel, Verkman A S

机构信息

Departments of Medicine and Physiology, Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA.

出版信息

J Mol Recognit. 2004 Sep-Oct;17(5):441-7. doi: 10.1002/jmr.709.

Abstract

Aqueous environments in living cells are crowded, with up to >50 wt% small and macromolecule-size solutes. We investigated quantitatively one important consequence of molecular crowding--reduced diffusion of biologically important solutes. Fluorescence correlation spectroscopy (FCS) was used to measure the diffusion of a series of fluorescent small solutes and macromolecules. In water, diffusion coefficients (D(o)w) were (in cm2/s x 10(-8)): rhodamine green (270), albumin (52), dextrans (75, 10 kDa; 10, 500 kDa), double-stranded DNAs (96, 20 bp; 10, 1 kb; 3.4, 4.5 kb) and polystyrene nanospheres (5.4, 20 nm diameter; 2.3, 100 nm). Aqueous-phase diffusion (Dw) in solutions crowded with Ficoll-70 (0-60 wt%) was reduced by up to 650-fold in an exponential manner: Dw = D(o)w exp (-[C]/[C]exp), where [C]exp is the concentration (in wt%) of crowding agent reducing D(o)w by 63%. FCS data for all solutes and Ficoll-70 concentrations fitted well to a model of single-component, simple (non-anomalous) diffusion. Interestingly [C]exp were nearly identical (11+/-2 wt%, SD) for diffusion of the very different types of macromolecules in Ficoll-70 solutions. However, [C]exp was dependent on the nature of the crowding agent: for example, [C]exp for diffusion of rhodamine green was 30 wt% for glycerol and 16 wt% for 500 kDa dextran. Our results indicate that molecular crowding can greatly reduce aqueous-phase diffusion of biologically important macromolecules, and demonstrate a previously unrecognized insensitivity of crowding effects on the size and characteristics of the diffusing species.

摘要

活细胞中的水环境十分拥挤,含有高达50%以上(重量比)的小分子和大分子溶质。我们定量研究了分子拥挤的一个重要后果——生物重要溶质扩散的减少。荧光相关光谱法(FCS)被用于测量一系列荧光小分子溶质和大分子的扩散。在水中,扩散系数(D(o)w)(单位为cm2/s×10(-8))分别为:罗丹明绿(270)、白蛋白(52)、葡聚糖(75, 10 kDa;10, 500 kDa)、双链DNA(96, 20 bp;10, 1 kb;3.4, 4.5 kb)以及聚苯乙烯纳米球(5.4, 20 nm直径;2.3, 100 nm)。在含有聚蔗糖-70(0-60 wt%)的拥挤溶液中的水相扩散(Dw)以指数方式降低了高达650倍:Dw = D(o)w exp (-[C]/[C]exp),其中[C]exp是使D(o)w降低63%的拥挤剂浓度(重量百分比)。所有溶质和聚蔗糖-70浓度的FCS数据都很好地符合单组分、简单(非反常)扩散模型。有趣的是,对于聚蔗糖-70溶液中非常不同类型的大分子扩散,[C]exp几乎相同(11±2 wt%,标准差)。然而,[C]exp取决于拥挤剂的性质:例如,罗丹明绿扩散的[C]exp对于甘油是30 wt%,对于500 kDa葡聚糖是16 wt%。我们的结果表明,分子拥挤可以极大地降低生物重要大分子的水相扩散,并证明了之前未被认识到的拥挤效应对于扩散物种大小和特性的不敏感性。

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