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Structural rearrangements of the chloroplast genome provide an important phylogenetic link in ferns.叶绿体基因组的结构重排为蕨类植物提供了重要的系统发育联系。
Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1856-60. doi: 10.1073/pnas.89.5.1856.
2
Dispersed repeats and structural reorganization in subclover chloroplast DNA.三叶草叶绿体DNA中的分散重复序列与结构重组
Mol Biol Evol. 1989 Jul;6(4):355-68. doi: 10.1093/oxfordjournals.molbev.a040558.
3
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Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms.除了rbcL数据外,来自缓慢进化的叶绿体反向重复序列的非编码序列并不支持被子植物与买麻藤类植物的亲缘关系。
Mol Biol Evol. 1996 Feb;13(2):383-96. doi: 10.1093/oxfordjournals.molbev.a025597.
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The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales.轮藻纲绿藻星芒鼓藻属和双星藻属的完整叶绿体DNA序列表明,在双星藻目的进化过程中,叶绿体基因组发生了广泛的变化。
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Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping.通过物理图谱和基因图谱揭示的脆弱刚毛藻叶绿体DNA的异常特征
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Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.蓝盆花叶绿体基因组中的广泛重排与重复序列和tRNA基因有关。
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10
The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses.一种石松类植物(小叶蕨类植物)——卷柏的叶绿体基因组存在独特的倒位、转座现象以及许多基因丢失情况。
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本文引用的文献

1
Chloroplast DNA evolution and systematics of Phanerophlebia (Dryopteridaceae) and related fern genera.叶绿体 DNA 进化与 Phanerophlebia(鳞毛蕨科)及相关蕨类植物属的系统发育。
Proc Natl Acad Sci U S A. 1988 Apr;85(8):2589-93. doi: 10.1073/pnas.85.8.2589.
2
A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae).叶绿体 DNA 倒位标志着向日葵科(菊科)的一个古老进化分支。
Proc Natl Acad Sci U S A. 1987 Aug;84(16):5818-22. doi: 10.1073/pnas.84.16.5818.
3
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families.天竺葵叶绿体 DNA 的不寻常结构:三倍大小的反向重复序列、广泛的基因重复、多个倒位和两个重复家族。
Proc Natl Acad Sci U S A. 1987 Feb;84(3):769-73. doi: 10.1073/pnas.84.3.769.
4
Rearrangements in the chloroplast genomes of mung bean and pea.绿豆和豌豆叶绿体基因组的重排。
Proc Natl Acad Sci U S A. 1981 Sep;78(9):5533-7. doi: 10.1073/pnas.78.9.5533.
5
Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost.当一个大的反向重复序列丢失时,叶绿体DNA重排会更频繁。
Cell. 1982 Jun;29(2):537-50. doi: 10.1016/0092-8674(82)90170-2.
6
Mutants of Chlamydomonas reinhardtii with physical alterations in their chloroplast DNA.莱茵衣藻中叶绿体DNA发生物理改变的突变体。
Plasmid. 1982 Mar;7(2):133-51. doi: 10.1016/0147-619x(82)90073-7.
7
Comparative organization of chloroplast genomes.叶绿体基因组的比较组织
Annu Rev Genet. 1985;19:325-54. doi: 10.1146/annurev.ge.19.120185.001545.
8
Common features of three inversions in wheat chloroplast DNA.小麦叶绿体DNA中三个倒位的共同特征。
Curr Genet. 1988 Apr;13(4):343-9. doi: 10.1007/BF00424430.
9
The site of deletion of the inverted repeat in pea chloroplast DNA contains duplicated gene fragments.豌豆叶绿体DNA中反向重复序列的缺失位点包含重复的基因片段。
Curr Genet. 1988;13(1):97-9. doi: 10.1007/BF00365763.
10
Sequence analysis of the junction of the large single copy region and the large inverted repeat in the petunia chloroplast genome.矮牵牛叶绿体基因组中大单拷贝区域与大反向重复序列连接处的序列分析。
Curr Genet. 1988 Nov;14(5):487-92. doi: 10.1007/BF00521274.

叶绿体基因组的结构重排为蕨类植物提供了重要的系统发育联系。

Structural rearrangements of the chloroplast genome provide an important phylogenetic link in ferns.

作者信息

Stein D B, Conant D S, Ahearn M E, Jordan E T, Kirch S A, Hasebe M, Iwatsuki K, Tan M K, Thomson J A

机构信息

Department of Biological Sciences, Mount Holyoke College, South Hadley, MA 01075.

出版信息

Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1856-60. doi: 10.1073/pnas.89.5.1856.

DOI:10.1073/pnas.89.5.1856
PMID:1542683
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC48552/
Abstract

The chloroplast genome of most land plants is highly conserved. In contrast, physical and gene mapping studies have revealed a highly rearranged chloroplast genome in species representing four families of ferns. In all four, there has been a rare duplication of the psbA gene and the order of the psbA, 16S, and 23S rRNA genes has been inverted. Our analysis shows that the described rearrangement results from a minimum of two inversions within the inverted repeat. This chloroplast DNA structure provides unambiguous evidence that phylogenetically links families of ferns once thought to belong to different major evolutionary lineages.

摘要

大多数陆地植物的叶绿体基因组高度保守。相比之下,物理图谱和基因图谱研究表明,在代表四个蕨类植物科的物种中,叶绿体基因组发生了高度重排。在所有这四个物种中,都出现了罕见的psbA基因重复,并且psbA、16S和23S rRNA基因的顺序发生了颠倒。我们的分析表明,所描述的重排是由反向重复序列内至少两次倒位导致的。这种叶绿体DNA结构提供了明确的证据,在系统发育上把曾经被认为属于不同主要进化谱系的蕨类植物科联系了起来。