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利用SSR标记对玉米轮回选择群体进行遗传多样性分析

[Genetic diversity analysis of maize recurrent selection populations by SSR marker].

作者信息

Huang Su-Hua, Teng Wen-Tao, Wang Yu-Juan, Dai Jing-Rui

机构信息

National Maize Improvement Center, China Agricultural University, Beijing 100094, China.

出版信息

Yi Chuan Xue Bao. 2004 Jan;31(1):73-80.

Abstract

Two cycles of mass (MS) and half-sib (HS) recurrent selection and one cycle of marker-assisted selection (MAS) for yield were carried out in two synthetic maize populations DC0 and XFC0, respectively. The genetic diversity of five maize (Zea mays L.) populations, including basic population DC0 and its developed populations HSC2, MSC2, and basic population XFC0 and its developed populations XFC1, were evaluated by 49 SSR primers, which are averagely distributed on 10 maize chromosomes. On the 49 SSR loci, a total of 185 alleles had been detected in these populations. At each locus, 1 to 7 alleles could be detected, with an average of 3.8. The proportion of polymorphic sites differed in the five maize populations, which were 90.3%, 85.9%, 84.9%, 85.9%, 80.5% for DC0, HSC2, MSC2, XFC0 and XFC1, respectively. Genotypes can be showed by the difference of the alleles detected on the 49 SSR loci. There were totally 430, 392, 377, 399 and 395 genotypes for DC0, HSC2, MSC2, XFC0 and XFC1, respectively. The mean gene heterozygosity calculated from the 185 alleles were 0.660, 0.644, 0.645, 0.662 and 0.655 for DC0, HSC2, MSC2, XFC0 and XFC1, respectively. All these results mean that after selection the ranges of variance of the populations decreased slightly. And the mean genetic distance calculated from the 185 alleles were 0.4695, 0.4696, 0.4698, 0.4836 and 0.4902 for DC0, HSC2, MSC2, XFC0 and XFC1, respectively. There was nearly no difference after selection in both the basic populations. Analyses on the distribution of genetic distance showed that most of the genetic distances in the developed populations were smaller than in the basic populations. But the ranges of the genetic distance were wider after selection in both populations. This result indicated that heterogeneity between some of the individuals in the developed populations increased after several times of recombination and exchange. All these indexes demonstrated that the genetic diversity of selection populations was similar to their primary populations, and genetic variation was maintained during recurrent selection.

摘要

分别在两个人工合成玉米群体DC0和XFC0中进行了两轮群体内轮回选择(MS)和半同胞轮回选择(HS)以及一轮产量的标记辅助选择(MAS)。利用平均分布在10条玉米染色体上的49对SSR引物,对5个玉米群体(包括基础群体DC0及其改良群体HSC2、MSC2,基础群体XFC0及其改良群体XFC1)的遗传多样性进行了评估。在这49个SSR位点上,这些群体共检测到185个等位基因。在每个位点上,可检测到1至7个等位基因,平均为3.8个。5个玉米群体的多态性位点比例有所不同,DC0、HSC2、MSC2、XFC0和XFC1分别为90.3%、85.9%、84.9%、85.9%和80.5%。通过在49个SSR位点上检测到的等位基因差异可以显示基因型。DC0、HSC2、MSC2、XFC0和XFC1分别共有430、392、377、399和395种基因型。根据185个等位基因计算的平均基因杂合度,DC0、HSC2、MSC2、XFC0和XFC1分别为0.660、0.644、0.645、0.662和0.655。所有这些结果表明,选择后群体的方差范围略有减小。根据185个等位基因计算的平均遗传距离,DC0、HSC2、MSC2、XFC0和XFC1分别为0.4695、0.4696、0.4698、0.4836和0.4902。两个基础群体选择后几乎没有差异。对遗传距离分布的分析表明,改良群体中的大多数遗传距离小于基础群体。但两个群体选择后的遗传距离范围变宽了。这一结果表明,经过几次重组和交换后,改良群体中一些个体之间的异质性增加了。所有这些指标表明,选择群体的遗传多样性与其原始群体相似,并且在轮回选择过程中遗传变异得以维持。

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