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[大熊猫Dmrt基因四个成员的克隆]

[Cloning of four members of giant panda Dmrt genes].

作者信息

Shui Yi, Yu Hong-Shi, Xia Lai-Xin, Guo Yi-Qing, Cheng Han-Hua, Zhou Rong-Jia

机构信息

Center for Developmental Biology, College of Life Sciences, Whuhan University, Wuhan 430072, China.

出版信息

Yi Chuan Xue Bao. 2004 May;31(5):468-73.

Abstract

Sex determining genes Mab-3 of C. elegans and Doublesex of Drosophila contain a common DNA binding motif called DM (Doublesex and Mab-3) domain, both of which regulate similar aspects of sexual development. Human Doublesex-related gene DMRT1 has been identified, which also contains the conserved DM-related DNA-binding domain and plays an essential role in gonadal differentiation. We amplified genomic DNA of the giant panda using the DM degenerate primers and detected two bands, approximately 140 bp and 250 bp. After cloned into T-easy vector and sequenced, four sequences showed high homology with the DM domain. Amino acid sequence of the first clone is 100% identical with the Dmrt1 of human, mouse and pig, hence we named it as pDmrt1. The second clone is 96% identical with human DMRTB1, and the third one 100% with the Dmrt3 of mouse and medaka, which were named as pDmrtb1 and pDmrt3 respectively. The last sequence contains an intron of 116 bp within the DM domain, which encodes an amino acid sequence 100% identical with human DMRTC2, accordingly we named it as pDmrtc2. Based on similarities of amino acid sequences of the DM domain, Dmrt protein sequences from human, mouse and giant panda were included in a phylogenetic tree. They revealed seven distinct subgroups: Dmrt1, Dmrt2, Dmrt3, Dmrt4 (DMRTA1), Dmrt5 (DMRTA2), Dmrt6 (DMRTB1) and Dmrt7 (DMRTC2). Our results further reveal the unexpected complexity and the evolutionary conservation of the DM domain gene family in both invertebrates and vertebrates.

摘要

秀丽隐杆线虫的性别决定基因Mab - 3和果蝇的双性基因都包含一个名为DM(双性和Mab - 3)结构域的共同DNA结合基序,二者都调节性发育的相似方面。已鉴定出人类双性相关基因DMRT1,其也包含保守的DM相关DNA结合结构域,并在性腺分化中起重要作用。我们使用DM简并引物扩增了大熊猫的基因组DNA,并检测到两条带,大小约为140 bp和250 bp。将其克隆到T - easy载体并测序后,四个序列与DM结构域具有高度同源性。第一个克隆的氨基酸序列与人类、小鼠和猪的Dmrt1 100%相同,因此我们将其命名为pDmrt1。第二个克隆与人类DMRTB1有96%的同一性,第三个与小鼠和青鳉的Dmrt3 100%相同,它们分别被命名为pDmrtb1和pDmrt3。最后一个序列在DM结构域内包含一个116 bp的内含子,其编码的氨基酸序列与人类DMRTC2 100%相同,因此我们将其命名为pDmrtc2。基于DM结构域氨基酸序列的相似性,将人类、小鼠和大熊猫的Dmrt蛋白序列纳入系统发育树。它们揭示了七个不同的亚组:Dmrt1、Dmrt2、Dmrt3、Dmrt4(DMRTA1)、Dmrt5(DMRTA2)、Dmrt6(DMRTB1)和Dmrt7(DMRTC2)。我们的结果进一步揭示了DM结构域基因家族在无脊椎动物和脊椎动物中意想不到的复杂性和进化保守性。

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