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五个主要的核糖体重复序列在红云杉和黑云杉的基因组DNA中占比很大且存在差异。

Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana.

作者信息

Bobola M S, Smith D E, Klein A S

机构信息

Department of Biochemistry, University of New Hampshire, Durham 03824-3544.

出版信息

Mol Biol Evol. 1992 Jan;9(1):125-37. doi: 10.1093/oxfordjournals.molbev.a040702.

Abstract

The nuclear ribosomal repeats for the 18S, 5.8S, and 26S RNAs of two closely related Picea (spruce) species were characterized by restriction mapping and Southern blot hybridization. Restriction polymorphisms were identified in the IGS and ITS sequences; however, no polymorphism was species specific. As many as five different rDNA repeat units were observed in individual genomes. The repeat size for these gymnosperms ranged from a minimum of 32 kbp to greater than 40 kbp, two- to threefold larger than the typical angiosperm rDNA unit. Slot-blot hybridizations were used to determine the nuclear rDNA copy concentration. Among P. rubens individuals threefold variation was observed in the rDNA copy concentration, and among P. mariana individuals such variation was as much as sixfold. At a size greater than 32 kbp and at a concentration averaging 1.2-1.3 x 10(4) copies/pg, the rDNA constitutes approximately 4% of the total genome. Regression analysis revealed a significant relationship between copy concentration of the rDNA repeat unit in P. rubens and geographic origins. Differences in the rDNA content in Picea could contribute to the variation, in overall genome size, that has been observed within conifer species.

摘要

通过限制性酶切图谱分析和Southern杂交,对两种近缘云杉属(云杉)物种的18S、5.8S和26S核糖体RNA的核核糖体重复序列进行了表征。在间隔区(IGS)和内转录间隔区(ITS)序列中鉴定出限制性片段长度多态性;然而,没有一种多态性是物种特异性的。在个体基因组中观察到多达五种不同的核糖体DNA(rDNA)重复单元。这些裸子植物的重复序列大小范围从最小32千碱基对(kbp)到大于40 kbp,比典型被子植物的rDNA单元大两到三倍。采用狭缝杂交法测定核rDNA的拷贝浓度。在红皮云杉个体中,rDNA拷贝浓度观察到三倍的变化,而在黑云杉个体中,这种变化高达六倍。在大小大于32 kbp且浓度平均为1.2 - 1.3×10⁴拷贝/皮克(pg)时,rDNA约占基因组总量的4%。回归分析显示,红皮云杉rDNA重复单元的拷贝浓度与地理起源之间存在显著关系。云杉属中rDNA含量的差异可能导致了在针叶树种中观察到的全基因组大小的变化。

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