Ali Hoda B M, Osman Samira A
Genetics and Cytology Department, Genetic Engineering and Biotechnology Research Division, National Research Centre, Giza, P.O. 12622, Egypt.
J Genet Eng Biotechnol. 2020 Oct 20;18(1):63. doi: 10.1186/s43141-020-00075-1.
Fluorescence In Situ Hybridization (FISH) played an essential role to locate the ribosomal RNA genes on the chromosomes that offered a new tool to study the chromosome structure and evolution in plant. The 45S and 5S rRNA genes are independent and localized at one or more loci per the chromosome complement, their positions along chromosomes offer useful markers for chromosome discriminations. In the current study FISH has been performed to locate 45S and 5S rRNA genes on the chromosomes of nine Lathyrus species belong to five different sections, all have chromosome number 2n=14, Lathyrus gorgoni Parl, Lathyrus hirsutus L., Lathyrus amphicarpos L., Lathyrus odoratus L., Lathyrus sphaericus Retz, Lathyrus incospicuus L, Lathyrus paranensis Burkart, Lathyrus nissolia L., and Lathyrus articulates L.
The revealed loci of 45S and 5S rDNA by FISH on metaphase chromosomes of the examined species were as follow: all of the studied species have one 45S rDNA locus and one 5S rDNA locus except L. odoratus L., L. amphicarpos L. and L. sphaericus Retz L. have two loci of 5S rDNA. Three out of the nine examined species have the loci of 45S and 5S rRNA genes on the opposite arms of the same chromosome (L. nissolia L., L. amphicarpos L., and L. incospicuus L.), while L. hirsutus L. has both loci on the same chromosome arm. The other five species showed the loci of the two types of rDNA on different chromosomes.
The detected 5S and 45S rDNA loci in Lathyrus could be used as chromosomal markers to discriminate the chromosome pairs of the examined species. FISH could discriminate only one chromosome pair out of the seven pairs in three species, in L. hirsutus L., L. nissolia L. and L. incospicuus L., and two chromosome pairs in five species, in L. paranensis Burkart, L. odoratus L., L. amphicarpos L., L. gorgoni Parl. and L. articulatus L., while it could discriminate three chromosome pairs in L. sphaericus Retz. these results could contribute into the physical genome mapping of Lathyrus species and the evolution of rDNA patterns by FISH in the coming studies in future.
荧光原位杂交(FISH)在定位染色体上的核糖体RNA基因方面发挥了重要作用,为研究植物染色体结构和进化提供了新工具。45S和5S rRNA基因是独立的,在每个染色体组中位于一个或多个位点,它们在染色体上的位置为染色体鉴别提供了有用的标记。在本研究中,已进行FISH以定位属于五个不同组的九种山黧豆属物种染色体上的45S和5S rRNA基因,所有物种的染色体数均为2n = 14,包括戈尔戈尼山黧豆(Lathyrus gorgoni Parl)、硬毛山黧豆(Lathyrus hirsutus L.)、两型豆(Lathyrus amphicarpos L.)、香豌豆(Lathyrus odoratus L.)、圆粒山黧豆(Lathyrus sphaericus Retz)、隐脉山黧豆(Lathyrus incospicuus L)、巴拉南山黧豆(Lathyrus paranensis Burkart)、黑香豌豆(Lathyrus nissolia L.)和关节山黧豆(Lathyrus articulates L.)。
FISH在被检测物种中期染色体上揭示的45S和5S rDNA位点如下:除香豌豆、两型豆和圆粒山黧豆有两个5S rDNA位点外,所有研究物种均有一个45S rDNA位点和一个5S rDNA位点。在所检测的九个物种中,有三个物种的45S和5S rRNA基因位点位于同一染色体的相对臂上(黑香豌豆、两型豆和隐脉山黧豆),而硬毛山黧豆的两个位点位于同一染色体臂上。其他五个物种的两种rDNA位点位于不同染色体上。
在山黧豆属中检测到的5S和45S rDNA位点可作为染色体标记来鉴别被检测物种的染色体对。FISH在硬毛山黧豆、黑香豌豆和隐脉山黧豆这三个物种的七对染色体中只能鉴别出一对染色体,在巴拉南山黧豆、香豌豆、两型豆、戈尔戈尼山黧豆和关节山黧豆这五个物种中能鉴别出两对染色体,而在圆粒山黧豆中能鉴别出三对染色体。这些结果将有助于未来对山黧豆属物种进行物理基因组作图以及通过FISH研究rDNA模式的进化。