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高粱属(禾本科)的基因组进化

Genome evolution in the genus Sorghum (Poaceae).

作者信息

Price H James, Dillon Sally L, Hodnett George, Rooney William L, Ross Larry, Johnston J Spencer

机构信息

Department of Soil and Crop Sciences, Texas Agricultural Experiment Station, Texas A&M University, College Station, TX 77843-2474, USA.

出版信息

Ann Bot. 2005 Jan;95(1):219-27. doi: 10.1093/aob/mci015.

Abstract

BACKGROUND AND AIMS

The roles of variation in DNA content in plant evolution and adaptation remain a major biological enigma. Chromosome number and 2C DNA content were determined for 21 of the 25 species of the genus Sorghum and analysed from a phylogenetic perspective.

METHODS

DNA content was determined by flow cytometry. A Sorghum phylogeny was constructed based on combined nuclear ITS and chloroplast ndhF DNA sequences.

KEY RESULTS

Chromosome counts (2n = 10, 20, 30, 40) were, with few exceptions, concordant with published numbers. New chromosome numbers were obtained for S. amplum (2n = 30) and S. leiocladum (2n = 10). 2C DNA content varies 8.1-fold (1.27-10.30 pg) among the 21 Sorghum species. 2C DNA content varies 3.6-fold from 1.27 pg to 4.60 pg among the 2n = 10 species and 5.8-fold (1.52-8.79 pg) among the 2n = 20 species. The x = 5 genome size varies over an 8.8-fold range from 0.26 pg to 2.30 pg. The mean 2C DNA content of perennial species (6.20 pg) is significantly greater than the mean (2.92 pg) of the annuals. Among the 21 species studied, the mean x = 5 genome size of annuals (1.15 pg) and of perennials (1.29 pg) is not significantly different. Statistical analysis of Australian species showed: (a) mean 2C DNA content of annual (2.89 pg) and perennial (7.73 pg) species is significantly different; (b) mean x = 5 genome size of perennials (1.66 pg) is significantly greater than that of the annuals (1.09 pg); (c) the mean maximum latitude at which perennial species grow (-25.4 degrees) is significantly greater than the mean maximum latitude (-17.6) at which annual species grow.

CONCLUSIONS

The DNA sequence phylogeny splits Sorghum into two lineages, one comprising the 2n = 10 species with large genomes and their polyploid relatives, and the other with the 2n = 20, 40 species with relatively small genomes. An apparent phylogenetic reduction in genome size has occurred in the 2n = 10 lineage. Genome size evolution in the genus Sorghum apparently did not involve a 'one way ticket to genomic obesity' as has been proposed for the grasses.

摘要

背景与目的

DNA含量变异在植物进化和适应过程中的作用仍是一个重大的生物学谜题。测定了高粱属25个物种中21个物种的染色体数目和2C DNA含量,并从系统发育的角度进行了分析。

方法

通过流式细胞术测定DNA含量。基于核ITS和叶绿体ndhF DNA序列构建了高粱系统发育树。

主要结果

染色体计数(2n = 10、20、30、40),除少数例外,与已发表的数目一致。获得了amplum高粱(2n = 30)和leiocladum高粱(2n = 10)的新染色体数目。21个高粱物种的2C DNA含量相差8.1倍(1.27 - 10.30 pg)。在2n = 10的物种中,2C DNA含量在1.27 pg至4.60 pg之间相差3.6倍,在2n = 20的物种中相差5.8倍(1.52 - 8.79 pg)。x = 5的基因组大小在0.26 pg至2.30 pg范围内相差8.8倍。多年生物种的平均2C DNA含量(6.20 pg)显著高于一年生物种的平均含量(2.92 pg)。在所研究的21个物种中,一年生物种(1.15 pg)和多年生物种(1.29 pg)的平均x = 5基因组大小没有显著差异。对澳大利亚物种的统计分析表明:(a)一年生(2.89 pg)和多年生(7.73 pg)物种的平均2C DNA含量有显著差异;(b)多年生物种(1.66 pg)的平均x = 5基因组大小显著大于一年生物种(1.09 pg);(c)多年生物种生长的平均最大纬度(-25.4度)显著大于一年生物种生长的平均最大纬度(-17.6度)。

结论

DNA序列系统发育将高粱分为两个谱系,一个谱系包含2n = 10且基因组较大的物种及其多倍体亲属,另一个谱系包含2n = 20、40且基因组相对较小的物种。在2n = 10的谱系中明显发生了基因组大小的系统发育缩减。高粱属的基因组大小进化显然不像对禾本科植物所提出的那样涉及“通往基因组肥胖的单程票”。

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本文引用的文献

2
Structure and evolution of the genomes ofsorghum bicolor andZea mays.
Theor Appl Genet. 1993 Jun;86(5):598-604. doi: 10.1007/BF00838715.
4
A RFLP linkage map of Sorghum bicolor (L.) Moench.
Theor Appl Genet. 1994 Oct;89(2-3):139-45. doi: 10.1007/BF00225133.
6
Evolution of genome size in the angiosperms.
Am J Bot. 2003 Nov;90(11):1596-603. doi: 10.3732/ajb.90.11.1596.
7
Construction of an RFLP map in sorghum and comparative mapping in maize.
Genome. 1994 Apr;37(2):236-43. doi: 10.1139/g94-033.
8
Chromosomal variation and evolution.
Science. 1966 Jun 10;152(3728):1463-9. doi: 10.1126/science.152.3728.1463.
9
Rapid flow cytometric analysis of the cell cycle in intact plant tissues.
Science. 1983 Jun 3;220(4601):1049-51. doi: 10.1126/science.220.4601.1049.
10

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