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通过单物种实验预测混合微生物培养物的稳定性:1. 现象学模型。

Predicting stability of mixed microbial cultures from single species experiments: 1. Phenomenological model.

作者信息

Pilyugin Sergei S, Reeves Gregory T, Narang Atul

机构信息

Department of Mathematics, University of Florida, Gainesville, FL 32611-8105, USA.

出版信息

Math Biosci. 2004 Dec;192(2):85-109. doi: 10.1016/j.mbs.2004.10.003. Epub 2004 Dec 8.

Abstract

The growth of mixed microbial cultures on mixtures of substrates is a fundamental problem of both theoretical and practical interest. On the one hand, the literature is abundant with experimental studies of mixed-substrate phenomena [T. Egli, The ecological and physiological significance of the growth of heterotrophic microorganisms with mixtures of substrates, Adv. Microbiol. Ecol. 14 (1995) 305-386]. On the other hand, a number of mathematical models of mixed-substrate growth have been analyzed in the last three decades. These models typically assume specific kinetic expressions for substrate uptake and biomass growth rates and their predictions are formulated in terms of parameters of the model. In this work, we formulate and analyze a general mathematical model of mixed microbial growth on mixtures of substitutable substrates. Using this model, we study the effect of mutual inhibition of substrate uptake rates on the stability of the equilibria of the model. Specifically, we address the following question: How much of the dynamics exhibited by two competing species can be inferred from single species data? We provide geometric criteria for stability of various types of equilibria corresponding to non-competitive exclusion, competitive exclusion, and coexistence of two competing species in terms of growth isoclines and consumption curves. A growth isocline is a curve in the plane of substrate concentrations corresponding to the zero net growth of a given species. In [G.T. Reeves, A. Narang, S.S. Pilyugin, Growth of mixed cultures on mixtures of substitutable substrates: The operating diagram for a structured model, J. Theor. Biol. 226 (2004) 143-157], we introduced consumption curves as sets of all possible combinations of substrate concentrations corresponding to balanced growth of a single microbial species. Both types of curves can be obtained in single species experiments.

摘要

混合微生物培养物在多种底物混合物上的生长是一个具有理论和实际意义的基本问题。一方面,关于混合底物现象的实验研究文献丰富[T. 埃格利,异养微生物在底物混合物上生长的生态和生理意义,《微生物生态学进展》14 (1995) 305 - 386]。另一方面,在过去三十年中已经分析了许多混合底物生长的数学模型。这些模型通常假设底物摄取和生物量生长速率具有特定的动力学表达式,并且它们的预测是根据模型参数来制定的。在这项工作中,我们构建并分析了一个关于可替代底物混合物上混合微生物生长的通用数学模型。使用这个模型,我们研究底物摄取速率的相互抑制对模型平衡稳定性的影响。具体来说,我们解决以下问题:从单一物种的数据中可以推断出两个竞争物种所表现出的多少动态?我们根据生长等斜线和消耗曲线,为对应于非竞争性排斥、竞争性排斥以及两个竞争物种共存的各种类型平衡的稳定性提供了几何标准。生长等斜线是底物浓度平面中对应于给定物种零净生长的曲线。在[G.T. 里夫斯、A. 纳朗、S.S. 皮柳金,可替代底物混合物上混合培养物的生长:结构化模型的操作图,《理论生物学杂志》226 (2004) 143 - 157]中,我们引入消耗曲线作为对应于单一微生物物种平衡生长的底物浓度的所有可能组合的集合。这两种类型的曲线都可以在单一物种实验中获得。

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