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通过理论方法研究卟啉金属化的反应机理。

Reaction mechanism of porphyrin metallation studied by theoretical methods.

作者信息

Shen Yong, Ryde Ulf

机构信息

Department of Theoretical Chemistry, Lund University, Chemical Centre, P. O. Box 124, 221 00 Lund, Sweden.

出版信息

Chemistry. 2005 Feb 18;11(5):1549-64. doi: 10.1002/chem.200400298.

Abstract

We have studied the reaction mechanism for the insertion of Mg2+ and Fe2+ into a porphyrin ring with density functional calculations with large basis set and including solvation, zero-point and thermal effects. We have followed the reaction from the outer-sphere complex, in which the metal is coordinated with six water molecules and the porphyrin is doubly protonated, until the metal ion is inserted into the deprotonated porphyrin ring with only one water ligand remaining. This reaction involves the stepwise displacement of five water molecules and the removal of two protons from the porphyrin ring. In addition, a step seems to be necessary in which a porphyrin pyrrolenine nitrogen atom changes its interaction from a hydrogen bond to a metal-bound solvent molecule to a direct coordination to the metal ion. If the protons are taken up by a neutral imidazole molecule, the deprotonation reactions are exothermic with minimal barriers. However, with a water molecule as an acceptor, they are endothermic. The ligand exchange reactions were approximately thermoneutral (+/-20 kJ mol(-1), with one exception) with barriers of up to 72 kJ mol(-1) for Mg and 51 kJ mol(-1) for Fe. For Mg, the highest barrier was found for the formation of the first bond to the porphyrin ring. For Fe, a higher barrier was found for the formation of the second bond to the porphyrin ring, but this barrier is probably lower in solution. No evidence was found for an initial pre-equilibrium between a planar and a distorted porphyrin ring. Instead, the porphyrin becomes more and more distorted as the number of metal-porphyrin bonds increase (by up to 191 kJ mol(-1)). This strain is released when the porphyrin becomes deprotonated and the metal moves into the ring plane. Implications of these findings for the chelatase enzymes are discussed.

摘要

我们采用大基组密度泛函计算方法,并考虑溶剂化、零点能和热效应,研究了Mg2+和Fe2+插入卟啉环的反应机理。我们跟踪了从外层配合物开始的反应,其中金属与六个水分子配位,卟啉被双质子化,直到金属离子插入去质子化的卟啉环,仅剩下一个水配体。该反应涉及五个水分子的逐步取代以及从卟啉环上去除两个质子。此外,似乎有一个步骤是必要的,即卟啉吡咯氮原子的相互作用从与金属结合的溶剂分子形成氢键转变为直接与金属离子配位。如果质子被中性咪唑分子吸收,去质子化反应是放热的,势垒极小。然而,以水分子作为受体时,它们是吸热的。配体交换反应近似为热中性(±20 kJ mol-1,有一个例外),Mg的势垒高达72 kJ mol-1,Fe的势垒为51 kJ mol-1。对于Mg,形成与卟啉环的第一个键时势垒最高。对于Fe,形成与卟啉环的第二个键时势垒较高,但在溶液中这个势垒可能较低。未发现平面卟啉环和扭曲卟啉环之间存在初始预平衡的证据。相反,随着金属 - 卟啉键数量的增加(高达191 kJ mol-1),卟啉变得越来越扭曲。当卟啉去质子化且金属移入环平面时,这种应变得以释放。讨论了这些发现对螯合酶的意义。

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