de Los Rios Miguel A, Plaxco Kevin W
Department of Chemistry and Biochemistry, University of California, Santa Barbara 93106, USA.
Biochemistry. 2005 Feb 1;44(4):1243-50. doi: 10.1021/bi048444l.
We have monitored the effects of salts and denaturants on the folding of the simple, two-state protein FynSH3. As predicted by Debye-Huckel limiting law, both the stability and (log) folding rate of FynSH3 increase nearly perfectly linearly (r(2)> 0.99) with the square root of ionic strength upon increasing concentrations of the relatively nonchaotropic salt sodium chloride. The stability of FynSH3 is also linear in square root ionic strength when the relatively nonchaotropic salts sodium bromide, potassium bromide, and potassium chloride are employed. Comparison of the kinetic and equilibrium effects of sodium chloride suggests that the electrostatic interactions formed in the folding transition state are approximately 50% as destabilizing as those formed in the native state, presumably reflecting the more compact nature of the latter. In contrast, the relationship between concentration and folding kinetics is more complex when the highly chaotropic salt guanidine hydrochloride (GuHCl) is employed. At moderate to high GuHCl concentrations the net effect of the linear, presumably chaotrope-induced deceleration and the presumed, square root-dependent ionic strength-induced acceleration is well approximated as linear, thus accounting for the observation of "chevron behavior" (log folding rate linear in denaturant concentration) typically reported for the folding of single domain proteins. At very low GuHCl concentrations, however, significant kinetic rollover is observed. This rollover is reasonably well fitted as a sum of a linear, presumably chaotropic effect and a square root-dependent, presumably electrostatic effect. These results thus not only provide insight into the nature of the folding transition state but also suggest that caution is in order when extrapolating GuHCl-based chevrons to estimate folding rates in the absence of denaturant and in interpreting deviations from chevron linearity as evidence for non-two-state kinetics.
我们监测了盐类和变性剂对简单的两态蛋白FynSH3折叠的影响。正如德拜-休克尔极限定律所预测的那样,随着相对非离液盐氯化钠浓度的增加,FynSH3的稳定性和(对数)折叠速率几乎与离子强度的平方根呈完美的线性增加(r²>0.99)。当使用相对非离液盐溴化钠、溴化钾和氯化钾时,FynSH3的稳定性在平方根离子强度方面也呈线性关系。氯化钠的动力学和平衡效应的比较表明,在折叠过渡态形成的静电相互作用的去稳定作用约为天然态形成的静电相互作用的50%,这大概反映了天然态更为紧凑的性质。相比之下,当使用高离液盐盐酸胍(GuHCl)时,浓度与折叠动力学之间的关系更为复杂。在中等至高GuHCl浓度下,线性的、大概是由离液剂诱导的减速作用与假定的、与平方根相关的离子强度诱导的加速作用的净效应很好地近似为线性,因此解释了通常报道的单结构域蛋白折叠的“人字形行为”(对数折叠速率与变性剂浓度呈线性关系)。然而,在非常低的GuHCl浓度下,观察到了显著的动力学翻转。这种翻转可以合理地拟合为线性的、大概是离液剂效应与与平方根相关的、大概是静电效应的总和。因此,这些结果不仅深入了解了折叠过渡态的性质,还表明在推断基于GuHCl的人字形曲线以估计无变性剂时的折叠速率以及将与人字形线性的偏差解释为非两态动力学的证据时需要谨慎。