Broda Małgorzata A, Siodłak Dawid, Rzeszotarska Barbara
Institute of Chemistry, University of Opole, 45-052 Opole, Poland.
J Pept Sci. 2005 Sep;11(9):546-55. doi: 10.1002/psc.655.
The FTIR spectra were analysed in the region of the nu(s)(N-H), AI(C=O) and nu(s)(Calpha=Cbeta) bands for a series of Ac-DeltaXaa-NMe2, where DeltaXaa = DeltaAla, (Z)-DeltaAbu, (Z)-DeltaLeu, (Z)-DeltaPhe and DeltaVal, to determine a predominant solution conformation of these alpha,beta-dehydropeptide-related molecules. Measurements were taken in CCl4, DCM and MeCN solutions. In the same way, spectra of saturated analogues Ac-Xaa-NMe2, where Xaa = Ala, Abu, Leu, Phe and Val, were investigated. To help interpret the spectroscopic results, conformational maps were calculated by the B3LYP/6-31+G** method. Also, the relative energies of all conformers of the dehydro compounds in vacuo as well as in the studied solvents in addition to the theoretical IR frequencies of these conformers were calculated. For comparison, molecules of two saturated analogues, Ac-L-Ala-NMe2 and Ac-L-Phe-NMe2, were calculated in a similar way. Both unsaturated and saturated compounds, which have an aliphatic side chain, occur in CCl4 and DCM mainly as a mixture of extended conformers with the C5 H-bond and open conformers. As solvent polarity increases, participation of the open conformers also increases, and in MeCN, the model amides are almost exclusively in the open form, except Ac-DeltaAla-NMe2, which shows a small amount of the H-bonded conformer. Ac-DeltaAla-NMe2 and Ac-DeltaAbu-NMe2 have stronger C5 hydrogen bonds than those of their saturated counterparts. As the calculations indicate, the open conformation of the unsaturated amides is conformer H/F with phi, psi -44 +/- 5 degrees, 127 +/- 4 degrees. This is the second lowest in energy conformer in vacuo and in CCl4 and the lowest one in more polar solvents. The open conformation of Ac-L-Ala-NMe2 constitutes conformer C with phi, psi -101.5 degrees, 112.7 degrees. For Ac-DeltaAla-NMe2 and Ac-DeltaAbu-NMe2, FTIR also reveals the presence of a third conformer. Calculations indicate that is the semiextended conformer D with the N1-H1...N2 hydrogen bond/contact. In all solvents, Ac-L-Phe-NMe2 and Ac-(Z)-DeltaPhe-NMe2 show only the extended E and the open H/F, respectively. In both there is an amide/pi(Ph) interaction.
对一系列Ac-ΔXaa-NMe₂(其中ΔXaa = ΔAla、(Z)-ΔAbu、(Z)-ΔLeu、(Z)-ΔPhe和ΔVal)在ν(s)(N-H)、AI(C=O)和ν(s)(Calpha=Cbeta)谱带区域的傅里叶变换红外光谱(FTIR)进行了分析,以确定这些α,β-脱氢肽相关分子的主要溶液构象。测量是在四氯化碳、二氯甲烷和乙腈溶液中进行的。同样,对饱和类似物Ac-Xaa-NMe₂(其中Xaa = Ala、Abu、Leu、Phe和Val)的光谱进行了研究。为了帮助解释光谱结果,通过B3LYP/6-31+G**方法计算了构象图。此外,还计算了脱氢化合物在真空以及所研究溶剂中所有构象异构体的相对能量,以及这些构象异构体的理论红外频率。为作比较,以类似方式计算了两种饱和类似物Ac-L-Ala-NMe₂和Ac-L-Phe-NMe₂的分子。具有脂肪族侧链的不饱和化合物和饱和化合物在四氯化碳和二氯甲烷中主要以具有C5氢键的伸展构象异构体和开放构象异构体的混合物形式存在。随着溶剂极性的增加,开放构象异构体的占比也增加,并且在乙腈中,除了Ac-ΔAla-NMe₂显示少量氢键结合构象异构体外,模型酰胺几乎完全以开放形式存在。Ac-ΔAla-NMe₂和Ac-ΔAbu-NMe₂的C5氢键比其饱和对应物的更强。计算表明,不饱和酰胺的开放构象是构象异构体H/F,其φ、ψ为-44±5°、127±4°。这是真空和四氯化碳中能量第二低的构象异构体,在极性更强的溶剂中是能量最低的构象异构体。Ac-L-Ala-NMe₂的开放构象构成构象异构体C,其φ、ψ为-101.5°、112.7°。对于Ac-ΔAla-NMe₂和Ac-ΔAbu-NMe₂,FTIR还揭示了第三种构象异构体的存在。计算表明它是具有N1-H1...N2氢键/接触的半伸展构象异构体D。在所有溶剂中,Ac-L-Phe-NMe₂和Ac-(Z)-ΔPhe-NMe₂分别仅显示伸展构象异构体E和开放构象异构体H/F。两者都存在酰胺/π(Ph)相互作用。