James William H, Baquero Esteban E, Shubert V Alvin, Choi Soo Hyuk, Gellman Samuel H, Zwier Timothy S
Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907-2084, USA.
J Am Chem Soc. 2009 May 13;131(18):6574-90. doi: 10.1021/ja901051v.
Resonant two-photon ionization (R2PI), UV hole-burning (UVHB), and resonant ion-dip infrared (RIDIR) spectroscopies have been used to record single-conformation infrared and ultraviolet spectra of three model synthetic foldamers with heterogeneous backbones, alpha/beta-peptides Ac-beta(3)-hAla-L-Phe-NHMe (betaalphaL), Ac-beta(3)-hAla-D-Phe-NHMe (betaalphaD), and Ac-L-Phe-beta(3)-hAla-NHMe (alphabetaL), isolated and cooled in a supersonic expansion. BetaalphaL and betaalphaD are diastereomers, differing only in the configuration of the alpha-amino acid residue; betaalphaL and alphabetaL contain the same residues, but differ in residue order. In all three alpha/beta-peptides the beta(3)-residue has S absolute configuration. UVHB spectroscopy is used to determine that there are six conformers of each molecule and to locate and characterize their S(0)-S(1) transitions in the origin region. RIDIR spectra in the amide NH stretch region reflect the number and strength of intramolecular H-bonds present. Comparison of the RIDIR spectra with scaled, harmonic vibrational frequencies and infrared intensities leads to definite assignments for the conformational families involved. C8/C7(eq) double-ring structures are responsible for three conformers of betaalphaL and four of betaalphaD, including those with the most intense transitions in the R2PI spectra. This preference for C8/C7(eq) double rings appears to be dictated by the C7(eq) ring of the alpha-peptide subunit. Three of the conformers of betaalphaL and betaalphaD form diastereomeric pairs (A/A', C/C', and G/G') that have nearly identical S(0)-S(1) origin positions in the UV and belong to the same conformational family, indicating no significant change associated with the change in chirality of the alpha-peptide subunit. However, betaalphaL favors formation of a C6/C5 conformer over C11, while the reverse preference holds in betaalphaD. Calculations indicate that the selective stabilization of the lowest-energy C11(g(+)) structure in betaalphaD occurs because this structure minimizes steric effects between the beta(2) methylene group and C=O(1). In the alpha/beta-peptide alphabetaL, two conformers dominate the spectrum, one assigned to a C5/C8 bifurcated double-ring, and the other to a C5/C6 double-ring structure. This preference for C5 rings in the alpha/beta-peptide occurs because the C5 ring is further stabilized by an amide NH...pi interaction involving an NH group on the adjacent amide, as it is in the alpha-peptides. Comparison of the NH stretch spectra of C8/C7(eq) structures in betaalphaL with their C7(eq)/C8 counterparts in alphabetaL shows that the central amide NH stretch is shifted to lower frequency by some 50-70 cm(-1) due to cooperative effects associated with the central amide accepting and donating a H-bond to neighboring amide groups. This swaps the ordering of the C8 and C7 NH stretch fundamentals in the two molecules.
共振双光子电离(R2PI)、紫外空穴烧蚀(UVHB)和共振离子偶极红外(RIDIR)光谱已被用于记录三种具有异质主链的模型合成折叠体——α/β肽Ac-β(3)-hAla-L-Phe-NHMe(βαL)、Ac-β(3)-hAla-D-Phe-NHMe(βαD)和Ac-L-Phe-β(3)-hAla-NHMe(αβL)的单构象红外和紫外光谱,这些折叠体在超声速膨胀中被分离和冷却。βαL和βαD是非对映异构体,仅在α-氨基酸残基的构型上有所不同;βαL和αβL包含相同的残基,但残基顺序不同。在所有三种α/β肽中,β(3)-残基具有S绝对构型。UVHB光谱用于确定每个分子有六个构象体,并在起始区域定位和表征它们的S(0)-S(1)跃迁。酰胺NH伸缩区域的RIDIR光谱反映了分子内存在的氢键的数量和强度。将RIDIR光谱与缩放后的谐振振动频率和红外强度进行比较,可对所涉及的构象家族进行明确的归属。C8/C7(eq)双环结构导致βαL的三个构象体和βαD的四个构象体的形成,包括那些在R2PI光谱中具有最强跃迁的构象体。对C8/C7(eq)双环的这种偏好似乎由α-肽亚基的C7(eq)环决定。βαL和βαD的三个构象体形成非对映体对(A/A'、C/C'和G/G'),它们在紫外光谱中的S(0)-S(1)起始位置几乎相同,并且属于相同的构象家族,这表明与α-肽亚基手性变化相关的变化不显著。然而,βαL比C11更倾向于形成C6/C5构象体,而在βαD中则相反。计算表明,βαD中最低能量的C11(g(+))结构的选择性稳定是因为这种结构使β(2)亚甲基与C=O(1)之间的空间效应最小化。在α/β肽αβL中,两个构象体主导光谱,一个被归属为C5/C8分叉双环,另一个为C5/C6双环结构。α/β肽中对C5环的这种偏好是因为C5环通过涉及相邻酰胺上的NH基团的酰胺NH...π相互作用而进一步稳定,就像在α-肽中一样。将βαL中C8/C7(eq)结构的NH伸缩光谱与其在αβL中的C7(eq)/C8对应物进行比较表明,由于与中心酰胺接受和向相邻酰胺基团供体氢键相关的协同效应,中心酰胺NH伸缩向低频移动了约50 - 70 cm(-1)。这交换了两个分子中C8和C7 NH伸缩基频的顺序。