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原核生物基因组G+C含量与最适生长温度之间的相关性十分稳固:对马拉希和加拉恩博尔的回应

The correlation between genomic G+C and optimal growth temperature of prokaryotes is robust: a reply to Marashi and Ghalanbor.

作者信息

Musto Hector, Naya Hugo, Zavala Alejandro, Romero Hector, Alvarez-Valin Fernando, Bernardi Giorgio

机构信息

Laboratorio de Organización y Evolución del Genoma, Facultad de Ciencias, Montevideo, Uruguay.

出版信息

Biochem Biophys Res Commun. 2005 May 6;330(2):357-60. doi: 10.1016/j.bbrc.2005.02.133.

Abstract

We have recently shown that optimal growth temperature (T(opt)) is one of the factors that influence genomic GC in prokaryotes. Our results have been disputed by Marashi and Ghalanbor, who claim that the correlations we show are not "robust" because the elimination of some points (arbitrarily chosen) leads, in some families, to variations in the correlation coefficients and/or significance of correlations. Here, we test whether the correlation between T(opt) and genomic GC is robust by using two independent approaches: detection of possible outliers (using robust Mahalanobis distance) and usage of a non-parametric correlation coefficient that is not sensitive to the presence of outliers. The results presented here reinforce our previous proposal that T(opt) is correlated with genomic GC in prokaryotes.

摘要

我们最近表明,最适生长温度(T(opt))是影响原核生物基因组GC含量的因素之一。我们的结果遭到了马拉希和加拉恩博尔的质疑,他们声称我们所展示的相关性并不“稳健”,因为剔除一些(任意选择的)数据点会导致在某些类别中相关系数和/或相关性的显著性发生变化。在此,我们通过两种独立的方法来检验T(opt)与基因组GC含量之间的相关性是否稳健:检测可能的异常值(使用稳健的马氏距离)以及使用对异常值的存在不敏感的非参数相关系数。此处呈现的结果强化了我们之前的观点,即原核生物中的T(opt)与基因组GC含量相关。

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