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基因组GC含量与最佳生长温度之间的相关性并不“稳健”。

Correlations between genomic GC levels and optimal growth temperatures are not 'robust'.

作者信息

Marashi Sayed-Amir, Ghalanbor Zahra

机构信息

Department of Biotechnology, Faculty of Science, University of Tehran, Enghelab Ave., Tehran, Iran.

出版信息

Biochem Biophys Res Commun. 2004 Dec 10;325(2):381-3. doi: 10.1016/j.bbrc.2004.10.051.

Abstract

Musto et al. [FEBS Lett. 573 (2004) 73] studied the correlations between GC levels and optimal growth temperatures in 20 prokaryotic families. They reported that positive correlations are generally observed, and many of these are significant. Here, we have shown that these correlations are not "robust," i.e., correlation coefficients and/or significance of correlations can be considerably influenced by exclusion of very few (even as small as one) species from each dataset. The sensitivity of correlations is assumed as a result of high levels of bias in the family datasets. We concluded that solely based on these data, one cannot establish that GC contents of prokaryotic genomes increase as a result of growth temperature increments.

摘要

穆斯托等人[《欧洲生物化学学会联合会快报》573 (2004) 73]研究了20个原核生物家族中鸟嘌呤-胞嘧啶(GC)含量与最适生长温度之间的相关性。他们报告称,通常观察到正相关,其中许多具有显著性。在此,我们已经表明这些相关性并非“稳健”,也就是说,通过从每个数据集中排除极少数(甚至少至一个)物种,相关系数和/或相关性的显著性会受到相当大的影响。相关性的敏感性被认为是家族数据集存在高度偏差的结果。我们得出结论,仅基于这些数据,无法确定原核生物基因组的GC含量会随着生长温度的升高而增加。

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