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全氘代细胞色素P450cam的制备及X射线晶体学分析。

Production and X-ray crystallographic analysis of fully deuterated cytochrome P450cam.

作者信息

Meilleur Flora, Dauvergne Marie Thérèse, Schlichting Ilme, Myles Dean A A

机构信息

European Molecular Laboratory Grenoble Outstation, 6 Rue Jules Horowitz, 38042 Grenoble, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):539-44. doi: 10.1107/S0907444905003872. Epub 2005 Apr 20.

Abstract

Neutron protein crystallography allows H-atom positions to be located in biological structures at the relatively modest resolution of 1.5-2.0 A. A difficulty of this technique arises from the incoherent scattering from hydrogen, which considerably reduces the signal-to-noise ratio of the data. This can be overcome by preparing fully deuterated samples. Efficient protocols for routine and low-cost production of in vivo deuterium-enriched proteins have been developed. Here, the overexpression and crystallization of highly (>99%) deuterium-enriched cytochrome P450cam for neutron analysis is reported. Cytochrome P450cam from Pseudomonas putida catalyses the hydroxylation of camphor from haem-bound molecular O(2) via a mechanism that is thought to involve a proton-shuttle pathway to the active site. Since H atoms cannot be visualized in available X-ray structures, neutron diffraction is being used to determine the protonation states and water structure at the active site of the enzyme. Analysis of both hydrogenated and perdeuterated P450cam showed no significant changes between the X-ray structures determined at 1.4 and 1.7 A, respectively. This work demonstrates that the fully deuterated protein is highly isomorphous with the native (hydrogenated) protein and is appropriate for neutron protein crystallographic analysis.

摘要

中子蛋白质晶体学能够以相对适中的1.5 - 2.0埃分辨率确定生物结构中氢原子的位置。该技术的一个难点在于氢的非相干散射,这会显著降低数据的信噪比。这一问题可通过制备完全氘代的样品来克服。目前已开发出用于常规且低成本生产体内富含氘蛋白的有效方案。在此,报道了用于中子分析的高度(>99%)富含氘的细胞色素P450cam的过表达和结晶。恶臭假单胞菌的细胞色素P450cam通过一种被认为涉及质子穿梭途径到达活性位点的机制,催化来自血红素结合分子氧(O₂)的樟脑羟基化反应。由于在现有的X射线结构中无法观察到氢原子,因此正在使用中子衍射来确定该酶活性位点的质子化状态和水结构。对氢化和全氘代P450cam的分析表明,分别在1.4埃和1.7埃处测定的X射线结构之间没有显著变化。这项工作表明,完全氘代的蛋白质与天然(氢化)蛋白质高度同晶型,适用于中子蛋白质晶体学分析。

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