Destro Riccardo, Soave Raffaella, Barzaghi Mario, Lo Presti Leonardo
Dipartimento di Chimica Fisica ed Elettrochimica, Universita' di Milano, Italy.
Chemistry. 2005 Aug 5;11(16):4621-34. doi: 10.1002/chem.200400964.
An experimental study of the electron-density distribution rho(r) in an angiotensin II receptor antagonist 1 has been made on the basis of single-crystal X-ray diffraction data collected at a low temperature. The crystal structure of 1 consists of infinite ribbons in which molecules are connected by an N-H...N hydrogen bond and several interactions of the C-H...O, C-H...N, and C-H...S type. The molecular conformation, characterized by the syn orientation of a tetrazole and a pyrimidinone ring with respect to a phenyl spacer group, is stabilized by two short SO and SN intramolecular contacts between a substituted thiophene fragment and the other two heterocycles of 1. The electrostatic nature of these interactions is documented. Furthermore, the Laplacian of rho(r) in the plane defined by the sulfur, oxygen, and nitrogen atoms involved in these interactions shows their strongly directional character as the regions of charge concentration on the valence shell of the nitrogen and oxygen atoms directly face the regions of charge depletion on the valence shell of the sulfur atom. All the chemical bonds and the relevant intra- and intermolecular interactions of 1 have been quantitatively described by the topological analysis of rho(r). Simple relationships between the bond path lengths (R(b)) and the values of rho at the bond critical points (rho(bcp)) have been obtained for the 28 C-C bonds, the seven N-C bonds, and the four O-C bonds. For the first two classes of bonds the relationship is in the form of a straight line, whose parameters, for the C-C bonds, agree, within experimental uncertainty, with those previously derived in our laboratory from a 19 K X-ray diffraction study of crystals of a different compound. Maps of the molecular electrostatic potential phi(r) derived from the experimental charge density display features that are important for the drug-receptor recognition of 1.
基于在低温下收集的单晶X射线衍射数据,对血管紧张素II受体拮抗剂1中的电子密度分布ρ(r)进行了实验研究。1的晶体结构由无限的条带组成,其中分子通过N-H...N氢键以及几种C-H...O、C-H...N和C-H...S类型的相互作用相连。以四唑和嘧啶酮环相对于苯基间隔基团的顺式取向为特征的分子构象,通过取代噻吩片段与1的其他两个杂环之间的两个短SO和SN分子内接触得以稳定。记录了这些相互作用的静电性质。此外,在由参与这些相互作用的硫、氧和氮原子所定义的平面中,ρ(r)的拉普拉斯算子显示出它们具有强烈的方向性,因为氮和氧原子价壳层上的电荷集中区域直接面对硫原子价壳层上的电荷耗尽区域。通过对ρ(r)的拓扑分析,对1的所有化学键以及相关的分子内和分子间相互作用进行了定量描述。对于28个C-C键、7个N-C键和4个O-C键,已经获得了键路径长度(R(b))与键临界点处的ρ值(ρ(bcp))之间的简单关系。对于前两类键,这种关系呈直线形式,对于C-C键,其参数在实验不确定度范围内与我们实验室先前从对另一种化合物晶体的19K X射线衍射研究中得出的参数一致。从实验电荷密度导出的分子静电势φ(r)图显示了对1的药物-受体识别很重要的特征。