Väisänen Sami, Dunlop Thomas W, Sinkkonen Lasse, Frank Christian, Carlberg Carsten
Department of Biochemistry, University of Kuopio, FIN-70211 Kuopio, Finland.
J Mol Biol. 2005 Jul 1;350(1):65-77. doi: 10.1016/j.jmb.2005.04.057.
The vitamin D3 24-hydroxylase gene (CYP24) is one of the most strongly induced genes known. Despite this, its induction by the hormone 1alpha,25-dihydroxyvitamin D3 (1alpha,25OH2D3) has been characterized only partially. Therefore, we monitored the spatio-temporal, 1alpha,25OH2D3-dependent chromatin acetylation status of the human CYP24 promoter by performing chromatin immunoprecipitation (ChIP) assays with antibodies against acetylated histone 4. This was achieved by performing PCR on 25 contiguous genomic regions spanning the first 7.7 kb of the promoter. ChIP assays using antibodies against the 1alpha,25OH2D3 receptor (VDR) revealed that, in addition to the proximal promoter, three novel regions further upstream associated with VDR. Combined in silico/in vitro screening identified in three of the four promoter regions sequences resembling known VDREs and reporter gene assays confirmed the inducibility of these regions by 1alpha,25OH2D3)=. In contrast, the fourth VDR-associated promoter region did not contain any recognizable classical VDRE that could account for the presence of the protein on this region. However, re-ChIP assays monitored on all four promoter regions simultaneous association of VDR with retinoid X receptor, coactivator, mediator and RNA polymerase II proteins. These proteins showed a promoter region-specific association pattern demonstrating the complex choreography of the CYP24 gene promoter activation over 300 minutes. Thus, this study reveals new information concerning the regulation of the CYP24 gene by 1alpha,25OH2D3, and is a demonstration of the simultaneous participation of multiple, structurally diverse response elements in promoter activation in a living cell.
维生素D3 24-羟化酶基因(CYP24)是已知诱导作用最强的基因之一。尽管如此,其受激素1α,25-二羟基维生素D3(1α,25OH2D3)的诱导作用仅得到部分表征。因此,我们通过使用抗乙酰化组蛋白4的抗体进行染色质免疫沉淀(ChIP)分析,监测了人CYP24启动子的时空依赖性、1α,25OH2D3依赖性染色质乙酰化状态。这是通过对跨越启动子前7.7 kb的25个连续基因组区域进行PCR来实现的。使用抗1α,25OH2D3受体(VDR)抗体的ChIP分析表明,除近端启动子外,还有三个位于更上游的新区域与VDR相关。计算机模拟/体外联合筛选在四个启动子区域中的三个区域鉴定出类似于已知维生素D反应元件(VDRE)的序列,报告基因分析证实了这些区域可被1α,25OH2D3诱导。相比之下,第四个与VDR相关的启动子区域不包含任何可解释该区域存在该蛋白的可识别经典VDRE。然而,在所有四个启动子区域上进行的再ChIP分析监测到VDR与视黄酸X受体、共激活因子、中介体和RNA聚合酶II蛋白的同时结合。这些蛋白显示出启动子区域特异性的结合模式,证明了CYP24基因启动子在300分钟内激活的复杂过程。因此,本研究揭示了有关1α,25OH2D3对CYP24基因调控的新信息,证明了多种结构不同的反应元件在活细胞启动子激活中的同时参与。