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[新世纪微生物学家的一项重要使命——培养不可培养微生物]

[An important mission for microbiologists in the new century-cultivation of the unculturable microorganisms].

作者信息

Chiao J S

机构信息

Institute of Plant Physiology and Ecology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2004 Sep;20(5):641-5.

Abstract

The present review summarizes the recent advances in cultivating the so-called recalcitrant microorganisms in various natural environments. Firstly, the use of new electron donors and acceptors reveals a list of unique and previously unrecognized physiotypes (Table 1), and the growth supporting reactions include oxidation of phosphite, arsenite, soil humic substances, benzene, Fe (II) and aryl-halides. The novel pure cultures obtained include: Desulfatogenum phosphitoxidans, lithochemotrophic arsenite oxidizing bacteria, Dechloromonas agitata, Dechalosoma suillum, and various Proteobacteria capable of decomposing soil humic substances anaerobically. Secondly, the adaption of nutrient-poor media (down to 1/100 of the traditional concentration), including sea water, soil extract and extension of natural habitats (insect hind-gut, submarine hot vent) are extremely rewarding. For example, cultivation of the ubiquitous SAR11 marine bacterioplankton clade reveals a phylum, small in cell size and genome, but dominating in ocean surface, thus constituting a huge biomass on earth. In addition, the nanosized hyperthermophilic Archaeon from a submarine hot vent, represents an unknown phylum, and because of its symbiotic living with Ignicocous cells, it is named Nanoarchaeum equitans. Its genome size is only 500kb, the smallest for prokaryote. Considering its hyperthermic living environment and small genome, N. equitans may possibly still a primitive form of microbial life and affords an advantageous culture for the study of life origin and evolution on earth. Thirdly, several novel isolation techniques have been developed such as gel microdrop encapsulation and diffusion chamber, both with the advantages of high-throughout operation and simulating to certain extent of the natural environment, thus allowing growth synergy based on cross-feeding to occur. Finally, it should be noted that the cultivation of unculturable microorganisms mentioned in this review does not require expensive and sophisticated equipments and most of the techniques can be adapted in our laboratory at home.

摘要

本综述总结了在各种自然环境中培养所谓难培养微生物的最新进展。首先,新电子供体和受体的使用揭示了一系列独特且以前未被认识的生理类型(表1),支持生长的反应包括亚磷酸、亚砷酸盐、土壤腐殖质、苯、Fe(II)和芳基卤化物的氧化。获得的新型纯培养物包括:亚磷酸氧化脱硫弧菌、石化学自养亚砷酸盐氧化细菌、活跃脱氯单胞菌、猪粪脱氯瘤菌以及各种能够厌氧分解土壤腐殖质的变形菌。其次,采用营养贫瘠的培养基(低至传统浓度的1/100),包括海水、土壤提取物,并扩展自然栖息地(昆虫后肠、海底热液喷口),收获颇丰。例如,对无处不在的SAR11海洋细菌浮游生物进化枝的培养揭示了一个细胞大小和基因组都很小,但在海洋表面占主导地位的门,因此在地球上构成了巨大的生物量。此外,来自海底热液喷口的纳米级嗜热古菌代表了一个未知的门,由于它与Ignicocous细胞共生生活,它被命名为“equitans纳米古菌”。它的基因组大小只有500kb,是原核生物中最小的。考虑到它的高温生存环境和小基因组,equitans纳米古菌可能仍然是微生物生命的一种原始形式,为研究地球生命起源和进化提供了一个有利的培养对象。第三,已经开发了几种新型分离技术,如凝胶微滴包封和扩散室,两者都具有高通量操作的优点,并在一定程度上模拟自然环境,从而允许基于交叉喂养的生长协同作用发生。最后,应该指出的是,本综述中提到的不可培养微生物的培养不需要昂贵和复杂的设备,并且大多数技术可以在我们国内的实验室中采用。

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