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An all atom force field for simulations of proteins and nucleic acids.一种用于蛋白质和核酸模拟的全原子力场。
J Comput Chem. 1986 Apr;7(2):230-252. doi: 10.1002/jcc.540070216.
2
Membrane type-1 matrix metalloproteinase (MT1-MMP) exhibits an important intracellular cleavage function and causes chromosome instability.膜型1基质金属蛋白酶(MT1-MMP)具有重要的细胞内切割功能,并导致染色体不稳定。
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Membrane-type-1 matrix metalloproteinase confers tumorigenicity on nonmalignant epithelial cells.膜型-1基质金属蛋白酶赋予非恶性上皮细胞致瘤性。
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Distinct roles for the catalytic and hemopexin domains of membrane type 1-matrix metalloproteinase in substrate degradation and cell migration.膜型1-基质金属蛋白酶的催化结构域和血红素结合蛋白结构域在底物降解和细胞迁移中的不同作用。
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Sequence-specific silencing of MT1-MMP expression suppresses tumor cell migration and invasion: importance of MT1-MMP as a therapeutic target for invasive tumors.MT1-MMP 表达的序列特异性沉默抑制肿瘤细胞迁移和侵袭:MT1-MMP 作为侵袭性肿瘤治疗靶点的重要性。
Oncogene. 2003 Nov 27;22(54):8716-22. doi: 10.1038/sj.onc.1206962.
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Catalytic- and ecto-domains of membrane type 1-matrix metalloproteinase have similar inhibition profiles but distinct endopeptidase activities.膜型1基质金属蛋白酶的催化结构域和胞外结构域具有相似的抑制谱,但具有不同的内肽酶活性。
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The intermediate S1' pocket of the endometase/matrilysin-2 active site revealed by enzyme inhibition kinetic studies, protein sequence analyses, and homology modeling.通过酶抑制动力学研究、蛋白质序列分析和同源性建模揭示的子宫内膜酶/基质溶素-2活性位点的中间S1'口袋。
J Biol Chem. 2003 Dec 19;278(51):51646-53. doi: 10.1074/jbc.M310109200. Epub 2003 Oct 7.
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From model complexes to metalloprotein inhibition: a synergistic approach to structure-based drug discovery.从模型复合物到金属蛋白抑制:基于结构的药物发现的协同方法。
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Membrane type I matrix metalloproteinase usurps tumor growth control imposed by the three-dimensional extracellular matrix.膜型I基质金属蛋白酶篡夺了由三维细胞外基质施加的肿瘤生长控制。
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Examination of novel zinc-binding groups for use in matrix metalloproteinase inhibitors.用于基质金属蛋白酶抑制剂的新型锌结合基团的研究
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新型巯基硫化物抑制剂对膜型1基质金属蛋白酶的酶活性及细胞介导的底物裂解的抑制作用。

Inhibition of enzyme activity of and cell-mediated substrate cleavage by membrane type 1 matrix metalloproteinase by newly developed mercaptosulphide inhibitors.

作者信息

Hurst Douglas R, Schwartz Martin A, Jin Yonghao, Ghaffari Mohammad A, Kozarekar Pallavi, Cao Jian, Sang Qing-Xiang Amy

机构信息

Department of Chemistry and Biochemistry and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4390, USA.

出版信息

Biochem J. 2005 Dec 15;392(Pt 3):527-36. doi: 10.1042/BJ20050545.

DOI:10.1042/BJ20050545
PMID:16026329
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1316292/
Abstract

MT1-MMP (membrane type 1 matrix metalloproteinase, or MMP-14) is a key enzyme in molecular carcinogenesis, tumour-cell growth, invasion and angiogenesis. Novel and potent MMP inhibitors with a mercaptosulphide zinc-binding functionality have been designed and synthesized, and tested against human MT1-MMP and other MMPs. Binding to the MT1-MMP active site was verified by the competitive-inhibition mechanism and stereochemical requirements. MT1-MMP preferred deep P1' substituents, such as homophenylalanine instead of phenylalanine. Novel inhibitors with a non-prime phthalimido substituent had K(i) values in the low-nanomolar range; the most potent of these inhibitors was tested and found to be stable against air-oxidation in calf serum for at least 2 days. To illustrate the molecular interactions of the inhibitor-enzyme complex, theoretical docking of the inhibitors into the active site of MT1-MMP and molecular minimization of the complex were performed. In addition to maintaining the substrate-specificity pocket (S1' site) van der Waals interactions, the P1' position side chain may be critical for the peptide-backbone hydrogen-bonding network. To test the inhibition of cell-mediated substrate cleavage, two human cancer-cell culture models were used. Two of the most potent inhibitors tested reached the target enzyme and effectively inhibited activation of proMMP-2 by endogenous MT1-MMP produced by HT1080 human fibrosarcoma cells, and blocked fibronectin degradation by prostate cancer LNCaP cells stably transfected with MT1-MMP. These results provide a model for mercaptosulphide inhibitor binding to MT1-MMP that may aid in the design of more potent and selective inhibitors for MT1-MMP.

摘要

MT1 - 基质金属蛋白酶(膜型1基质金属蛋白酶,即MMP - 14)是分子致癌、肿瘤细胞生长、侵袭和血管生成过程中的关键酶。已设计并合成了具有巯基硫化锌结合功能的新型强效MMP抑制剂,并针对人MT1 - MMP和其他MMP进行了测试。通过竞争性抑制机制和立体化学要求验证了其与MT1 - MMP活性位点的结合。MT1 - MMP更倾向于深度P1'取代基,如高苯丙氨酸而非苯丙氨酸。具有非prime邻苯二甲酰亚胺取代基的新型抑制剂的K(i)值在低纳摩尔范围内;对其中最有效的抑制剂进行测试,发现其在小牛血清中至少2天对空气氧化稳定。为了阐明抑制剂 - 酶复合物的分子相互作用,进行了抑制剂在MT1 - MMP活性位点的理论对接以及复合物的分子最小化。除了维持底物特异性口袋(S1'位点)范德华相互作用外,P1'位置侧链对于肽主链氢键网络可能至关重要。为了测试对细胞介导的底物切割的抑制作用,使用了两个人类癌细胞培养模型。测试的两种最有效的抑制剂作用于目标酶,有效抑制了HT1080人纤维肉瘤细胞产生的内源性MT1 - MMP对proMMP - 2的激活,并阻断了稳定转染MT1 - MMP的前列腺癌LNCaP细胞对纤连蛋白的降解。这些结果为巯基硫化物抑制剂与MT1 - MMP的结合提供了一个模型,这可能有助于设计更有效和选择性更强的MT1 - MMP抑制剂。