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基于质体DNA序列的莎草科刺子莞族系统发育研究,特别关注非洲的属。

A phylogeny of the schoenoid sedges (Cyperaceae: Schoeneae) based on plastid DNA sequences, with special reference to the genera found in Africa.

作者信息

Verboom G Anthony

机构信息

Bolus Herbarium, University of Cape Town, Private Bag, 7701 Rondebosch, South Africa.

出版信息

Mol Phylogenet Evol. 2006 Jan;38(1):79-89. doi: 10.1016/j.ympev.2005.05.012. Epub 2005 Jul 20.

Abstract

Despite its large size (about 700 species), the australy-centred sedge tribe Schoeneae has received little explicit phylogenetic study, especially using molecular data. As a result, generic relationships are poorly understood, and even the monophyly of the tribe is open to question. In this study, plastid DNA sequences (rbcL, trnL-trnF, and rps16) drawn from a broad array of Schoeneae are analysed using Bayesian and parsimony-based approaches to infer a framework phylogeny for the tribe. Both analytical methods broadly support the monophyly of Schoeneae, Bayesian methods doing so with good support. Within the schoenoid clade, there is strong support for a series of monophyletic generic groupings whose interrelationships are unclear. These lineages form a large polytomy at the base of Schoeneae that may be indicative of past radiation, probably following the fragmentation of Gondwana. Most of these lineages contain both African and non-African members, suggesting a history of intercontinental dispersal. The results of this study clearly identify the relationships of the African-endemic schoenoid genera and demonstrate that the African-Australasian genus Tetraria, like Costularia, is polyphyletic. This pattern is morphologically consistent and suggests that these genera require realignment.

摘要

以澳大利亚为中心的莎草族Schoeneae尽管种类繁多(约700种),但很少有明确的系统发育研究,尤其是利用分子数据进行的研究。因此,属间关系了解甚少,甚至该族的单系性也受到质疑。在本研究中,使用贝叶斯法和简约法对从广泛的Schoeneae物种中提取的质体DNA序列(rbcL、trnL-trnF和rps16)进行分析,以推断该族的系统发育框架。两种分析方法在很大程度上都支持Schoeneae的单系性,贝叶斯法的支持力度良好。在类Schoeneae分支内,强烈支持一系列单系的属类群,但它们之间的相互关系尚不清楚。这些谱系在Schoeneae基部形成一个大的多歧分支,这可能表明过去的辐射,可能是在冈瓦纳大陆分裂之后。这些谱系中的大多数都包含非洲和非非洲成员,表明存在洲际扩散的历史。本研究结果明确了非洲特有的类Schoeneae属的关系,并证明非洲-澳大拉西亚的Tetraria属与Costularia属一样是多系的。这种模式在形态上是一致的,表明这些属需要重新分类。

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