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作为密度和离子强度函数的DNA胆甾相螺距

DNA cholesteric pitch as a function of density and ionic strength.

作者信息

Stanley Christopher B, Hong Helen, Strey Helmut H

机构信息

Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA, USA.

出版信息

Biophys J. 2005 Oct;89(4):2552-7. doi: 10.1529/biophysj.105.064550. Epub 2005 Jul 22.

Abstract

The nature of chiral interactions among chiral biopolymers, such as DNA, protein alpha-helices, and rodlike virus particles, remains elusive. In particular, a satisfactory model connecting molecular chiral interactions and the pitch of the resulting chiral mesophases is lacking. We report the measurement of short-fragment (146-bp) DNA cholesteric spherulite pitch as a function of osmotic pressure, average DNA interaxial spacing, and salt concentration. We determined cholesteric pitch and interaxial spacing by polarizing optical microscopy and x-ray scattering, respectively, from which the twist-angle between DNA molecules can be calculated. Surprisingly, we found that decreasing ionic strength resulted in weaker chiral interactions between DNA chains, as evidenced by the decrease in the twist-angle, and consequent increase in the cholesteric pitch, for a fixed interaxial spacing. We propose that this behavior can be explained by increased smearing-out of the helical charge pattern along DNA as the Debye screening length is increased.

摘要

手性生物聚合物(如DNA、蛋白质α-螺旋和棒状病毒颗粒)之间手性相互作用的本质仍然难以捉摸。特别是,缺乏一个将分子手性相互作用与所得手性中间相的螺距联系起来的令人满意的模型。我们报告了短片段(146-bp)DNA胆甾型球晶螺距作为渗透压、平均DNA轴间距和盐浓度的函数的测量结果。我们分别通过偏振光学显微镜和X射线散射确定了胆甾型螺距和轴间距,由此可以计算DNA分子之间的扭转角。令人惊讶的是,我们发现,对于固定的轴间距,降低离子强度会导致DNA链之间的手性相互作用减弱,这由扭转角的减小以及随之而来的胆甾型螺距的增加所证明。我们提出,随着德拜屏蔽长度的增加,沿着DNA的螺旋电荷模式的涂抹增加可以解释这种行为。

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本文引用的文献

2
Electrostatic interaction between long, rigid helical macromolecules at all interaxial angles.长的刚性螺旋大分子在所有轴间角度下的静电相互作用。
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug;62(2 Pt B):2576-96. doi: 10.1103/physreve.62.2576.
3
Twist in chiral interaction between biological helices.生物螺旋之间手性相互作用中的扭转。
Phys Rev Lett. 2000 Mar 13;84(11):2537-40. doi: 10.1103/PhysRevLett.84.2537.
5
Macromolecules and water: probing with osmotic stress.大分子与水:渗透压应激探测
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