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天然三角叶杨杂种中叶片缩合单宁和酚苷调控的功能基因组学分析

Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids.

作者信息

Harding Scott A, Jiang Hongying, Jeong Mijeong Lee, Casado Fanny L, Lin Han-Wei, Tsai Chung-Jui

机构信息

Biotechnology Research Center, School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA.

出版信息

Tree Physiol. 2005 Dec;25(12):1475-86. doi: 10.1093/treephys/25.12.1475.

DOI:10.1093/treephys/25.12.1475
PMID:16137933
Abstract

Regulation of leaf condensed tannins (CT) and salicylate-derived phenolic glycosides (PG) in fast- and slow-growing cottonwood backcrosses was analyzed by metabolic profiling and cDNA microarray hybridization. Seven hybrid lines of Populus fremontii L. and P. angustifolia James exhibiting growth/CT-PG phenotypes ranging from fast/low (Lines 18 and 1979) to slow/high (Lines 1012 and RL2) and intermediate (Lines NUL, 3200 and RM5) were investigated. Methanol-extractable leaf metabolites were analyzed by gas chromatography-mass spectrometry, and the results evaluated by principal component analysis. The hybrid lines formed separate clusters based on their primary metabolite profiles, with cluster arrangement also reflecting differences in CT-PG phenotype. Nitrogen (N) supply was manipulated to alter CT-PG partitioning and to obtain molecular insights into how primary metabolism interfaces with CT-PG accumulation. Three backcross lines (RM5, 1012, 18) exhibiting differential CT-PG responses to a 10-day hydroponic N-deprivation treatment were chosen for metabolite and gene expression analyses. The fast- growing Line 18 showed a minimal CT-PG response to N deprivation, and a reduction in photosynthetic gene expression. Line 1012 exhibited a strong phenylpropanoid response to N deprivation, including a doubling in phenylalanine ammonia-lyase (PAL) gene expression, and a shift from CT accumulation in the absence of stress toward PG accumulation under N-deprivation conditions. Amino acid concentrations were depressed in Lines 18 and 1012, as was expression of nitrate-sensitive genes coding for transketolase (TK), and malate dehydrogenase (MDH). Genes associated with protein synthesis and fate were down-regulated in Line 1012 but not in Line 18. Line RM5 exhibited a comparatively large increase in CT in response to N deprivation, but did not sustain decreases in amino acid concentrations, or changes in PAL, TK or MDH gene expression. Molecular characterization of the variable CT-PG responses shows promise for the identification and future testing of candidate genes for CT-PG trait selection or manipulation.

摘要

通过代谢谱分析和cDNA微阵列杂交,对速生和慢生三角叶杨回交后代叶片中缩合单宁(CT)和水杨酸衍生的酚糖苷(PG)的调控进行了分析。研究了7个弗里蒙特杨(Populus fremontii L.)和狭叶杨(P. angustifolia James)的杂交品系,它们表现出从速生/低(品系18和1979)到慢生/高(品系1012和RL2)以及中间型(品系NUL、3200和RM5)的生长/CT-PG表型。采用气相色谱-质谱联用技术分析甲醇可提取的叶片代谢产物,并通过主成分分析对结果进行评估。杂交品系根据其初级代谢产物谱形成了不同的聚类,聚类排列也反映了CT-PG表型的差异。通过控制氮(N)供应来改变CT-PG的分配,并从分子层面深入了解初级代谢与CT-PG积累之间的相互作用。选择了3个回交品系(RM5、1012、18),它们对为期10天的水培缺氮处理表现出不同的CT-PG反应,用于代谢产物和基因表达分析。速生品系18对缺氮处理的CT-PG反应最小,光合基因表达下降。品系1012对缺氮处理表现出强烈的苯丙烷类反应,包括苯丙氨酸解氨酶(PAL)基因表达增加一倍,并且在无胁迫条件下从CT积累转变为缺氮条件下的PG积累。品系18和1012中的氨基酸浓度降低,编码转酮醇酶(TK)和苹果酸脱氢酶(MDH)的硝酸盐敏感基因的表达也降低。与蛋白质合成和命运相关的基因在品系1012中下调,但在品系18中未下调。品系RM5对缺氮处理的CT反应相对较大,但氨基酸浓度没有持续下降,PAL、TK或MDH基因表达也没有变化。可变CT-PG反应的分子特征为CT-PG性状选择或操纵的候选基因的鉴定和未来测试带来了希望。

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