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单链构象多态性(SSCP)分析作为一种新的诊断工具,用于区分鹿科动物体内的后圆线虫亚科(线虫纲:原圆科)具背刺幼虫。

Single-strand conformation polymorphism (SSCP) analysis as a new diagnostic tool to distinguish dorsal-spined larvae of the Elaphostrongylinae (Nematoda: Protostrongylidae) from cervids.

作者信息

Huby-Chilton Florence, Chilton Neil B, Lankester Murray W, Gajadhar Alvin A

机构信息

Centre for Animal Parasitology, Canadian Food Inspection Agency, Saskatoon, Saskatchewan, Canada S7N 2R3.

出版信息

Vet Parasitol. 2006 Jan 30;135(2):153-62. doi: 10.1016/j.vetpar.2005.08.001. Epub 2005 Sep 23.

Abstract

Single-strand conformation polymorphism (SSCP) was used to genetically differentiate morphologically indistinguishable first-stage larvae (L(1)) of the six species of elaphostrongyline nematodes. A partial fragment (317-336bp) of the first internal transcribed spacer (pITS-1) plus 5' flanking region (76bp of the 18S gene) of the nuclear ribosomal DNA (rDNA) was amplified from individual L(1) of known identity and subjected to SSCP. The results showed that the four species of elaphostrongylines found in North American cervids, Parelaphostrongylus tenuis, P. andersoni, P. odocoilei and Elaphostrongylus rangiferi, could be distinguished from one another based on their distinct (i.e. species-specific) SSCP profiles. In addition, E. alces, a species that occurs in moose in Fennoscandinavia, also had a distinct SSCP profile with respect to the other species of elaphostrongylines. However, the SSCP profiles of E. cervi could not be distinguished from those of E. rangiferi because of a lack of interspecific sequence differences in this region of the ITS-1. The distinct SSCP profiles for the other species were consistent with the interspecific differences in ITS-1 sequences, which ranged from 2 (between P. tenuis and P. andersoni) to 59bp (between genera). The pITS-1 SSCP approach was also used to identify unknown elaphostrongyline L(1) from different hosts and localities in North America. The ability to distinguish between L(1) of the four elaphostrongyline species that occur in North American cervids has important diagnostic and epidemiological implications.

摘要

单链构象多态性(SSCP)被用于从基因层面区分六种隐孢子虫线虫形态上难以区分的第一期幼虫(L(1))。从已知身份的单个L(1)中扩增出核糖体DNA(rDNA)的第一内部转录间隔区(pITS-1)的部分片段(317 - 336bp)加上5'侧翼区(18S基因的76bp),并进行SSCP分析。结果表明,在北美鹿类中发现的四种隐孢子虫线虫,即细颈隐孢子虫(Parelaphostrongylus tenuis)、安德森隐孢子虫(P. andersoni)、奥氏隐孢子虫(P. odocoilei)和驯鹿隐孢子虫(Elaphostrongylus rangiferi),可根据其独特的(即物种特异性的)SSCP图谱相互区分。此外,在斯堪的纳维亚半岛驼鹿中发现的一种驼鹿隐孢子虫(E. alces),相对于其他隐孢子虫线虫物种也有独特的SSCP图谱。然而,由于ITS-1这一区域缺乏种间序列差异,鹿隐孢子虫(E. cervi)的SSCP图谱无法与驯鹿隐孢子虫的区分开来。其他物种独特的SSCP图谱与ITS-1序列的种间差异一致,种间差异范围从2bp(细颈隐孢子虫和安德森隐孢子虫之间)到59bp(属间)。pITS-1 SSCP方法还被用于鉴定来自北美不同宿主和地区的未知隐孢子虫线虫L(1)。区分北美鹿类中出现的四种隐孢子虫线虫L(1)的能力具有重要的诊断和流行病学意义。

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