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DING蛋白来自假单胞菌属。

DING proteins are from Pseudomonas.

作者信息

Lewis Alan P, Crowther Daniel

机构信息

Bioinformatics Discovery and Analysis, GlaxoSmithKline Medicines Research Centre, Stevenage, UK.

出版信息

FEMS Microbiol Lett. 2005 Nov 15;252(2):215-22. doi: 10.1016/j.femsle.2005.08.047. Epub 2005 Sep 15.

Abstract

DING proteins have been described as animal and plant proteins with potential biomineralisation, receptor or signalling roles that have been characterised by an N-terminal DINGGG-sequence. However, these sequences have only ever been identified as either N-terminal peptides or partial cDNA sequences, and have yet to be detected in any of the many genomic animal and plant genomes now available. Microbial relatives of the DING proteins have been described, which appear to be periplasmic phosphate-binding proteins. Recently, full-length Pseudomonas aeruginosa UCBPP-PA14 and Hypericum perforatum genes have been sequenced that show high homology to the published DING protein N-terminal sequences, and small peptides previously identified in conjunction with the peptide sequencing of DING proteins can also be mapped to regions across these full-length sequences. Searching with these sequences identifies other plant and animal cDNA fragments in the public nucleotide databases, and, additionally, an unordered rat genomic contig that contains a DING-like sequence on a small fragment. Analysing the codon usage of these DNA sequences identifies all of these sequences as of Pseudomonas origin, suggesting that DING proteins do not exist in eukaryotes, but instead are potentially due to microbial contamination or infection.

摘要

DING蛋白被描述为具有潜在生物矿化、受体或信号传导作用的动植物蛋白,其特征是具有N端DINGGG序列。然而,这些序列仅被鉴定为N端肽或部分cDNA序列,在目前可用的众多动植物基因组中均未被检测到。已描述了DING蛋白的微生物同源物,它们似乎是周质磷酸盐结合蛋白。最近,已对铜绿假单胞菌UCBPP-PA14和贯叶连翘的全长基因进行了测序,这些基因与已发表的DING蛋白N端序列具有高度同源性,并且先前与DING蛋白肽测序一起鉴定的小肽也可以定位到这些全长序列的区域。用这些序列进行搜索可在公共核苷酸数据库中识别其他动植物cDNA片段,此外,还可识别一个无序的大鼠基因组重叠群,该重叠群在一个小片段上包含一个类似DING的序列。分析这些DNA序列的密码子使用情况可确定所有这些序列均源自假单胞菌,这表明DING蛋白不存在于真核生物中,而是可能由于微生物污染或感染所致。

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