Gao Qi, Pang Yue, Wu Yu, Ma Fei, Li Qing-Wei
College of Life Sciences, Liaoning Normal University, Dalian 116029, China.
Yi Chuan Xue Bao. 2005 Oct;32(10):1045-52.
A cDNA library (2.1 x 10(6) pfu/mL) was constructed from the oral gland of Lampetra japonica. After random selection of clones for sequencing, 1 323 clones with inserts longer than 100 bp and with good chromato-grams were obtained. Using BlastX and BlastN programs, We found 653 ESTs (49.36%) that shared significant homology with known sequences in protein or nucleotide databases of NCBI, including 328 ESTs homologous to known sequences of Petromazonidae animals. These ESTs were classified into 11 different functional categories,the highest proportion of which was related to protein synthesis. Out of the 1323 ESTs, 162 non-redundant contigs were assembled from 547 sequences after alignment using software at the threshold of more than 90% homology over a minimum of 20 base pairs. There were eight full-length cDNAs with complete open reading frame. Further studies on the ESTs in the library may be helpful to elucidate the components of Lampetra japonica oral gland and to understand the function of those proteins at the molecular level.
从日本七鳃鳗的口腔腺构建了一个cDNA文库(2.1×10⁶ pfu/mL)。随机挑选克隆进行测序后,获得了1323个插入片段长度超过100 bp且色谱图良好的克隆。使用BlastX和BlastN程序,我们发现653个EST(49.36%)与NCBI蛋白质或核苷酸数据库中的已知序列具有显著同源性,其中包括328个与盲鳗科动物已知序列同源的EST。这些EST被分为11个不同的功能类别,其中比例最高的与蛋白质合成相关。在1323个EST中,使用软件在至少20个碱基对以上90%以上同源性的阈值下比对后,从547个序列组装出162个非冗余重叠群。有8个具有完整开放阅读框的全长cDNA。对文库中EST的进一步研究可能有助于阐明日本七鳃鳗口腔腺的组成成分,并在分子水平上理解这些蛋白质的功能。