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孟加拉虎(Panthera tigris tigris)全长富集cDNA文库的构建及表达序列标签的初步分析。

Construction of a full-length enriched cDNA library and preliminary analysis of expressed sequence tags from Bengal Tiger Panthera tigris tigris.

作者信息

Liu Changqing, Liu Dan, Guo Yu, Lu Taofeng, Li Xiangchen, Zhang Minghai, Ma Jianzhang, Ma Yuehui, Guan Weijun

机构信息

Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China.

出版信息

Int J Mol Sci. 2013 May 24;14(6):11072-83. doi: 10.3390/ijms140611072.

Abstract

In this study, a full-length enriched cDNA library was successfully constructed from Bengal tiger, Panthera tigris tigris, the most well-known wild Animal. Total RNA was extracted from cultured Bengal tiger fibroblasts in vitro. The titers of primary and amplified libraries were 1.28 × 106 pfu/mL and 1.56 × 109 pfu/mL respectively. The percentage of recombinants from unamplified library was 90.2% and average length of exogenous inserts was 0.98 kb. A total of 212 individual ESTs with sizes ranging from 356 to 1108 bps were then analyzed. The BLASTX score revealed that 48.1% of the sequences were classified as a strong match, 45.3% as nominal and 6.6% as a weak match. Among the ESTs with known putative function, 26.4% ESTs were found to be related to all kinds of metabolisms, 19.3% ESTs to information storage and processing, 11.3% ESTs to posttranslational modification, protein turnover, chaperones, 11.3% ESTs to transport, 9.9% ESTs to signal transducer/cell communication, 9.0% ESTs to structure protein, 3.8% ESTs to cell cycle, and only 6.6% ESTs classified as novel genes. By EST sequencing, a full-length gene coding ferritin was identified and characterized. The recombinant plasmid pET32a-TAT-Ferritin was constructed, coded for the TAT-Ferritin fusion protein with two 6× His-tags in N and C-terminal. After BCA assay, the concentration of soluble Trx-TAT-Ferritin recombinant protein was 2.32 ± 0.12 mg/mL. These results demonstrated that the reliability and representativeness of the cDNA library attained to the requirements of a standard cDNA library. This library provided a useful platform for the functional genome and transcriptome research of Bengal tigers.

摘要

在本研究中,成功构建了来自最著名的野生动物孟加拉虎(Panthera tigris tigris)的全长富集cDNA文库。从体外培养的孟加拉虎成纤维细胞中提取总RNA。原始文库和扩增文库的滴度分别为1.28×10⁶ pfu/mL和1.56×10⁹ pfu/mL。未扩增文库的重组率为90.2%,外源插入片段的平均长度为0.98 kb。然后对总共212个大小在356至1108 bp之间的个体EST进行了分析。BLASTX评分显示,48.1%的序列被分类为强匹配,45.3%为名义匹配,6.6%为弱匹配。在具有已知推定功能的EST中,发现26.4%的EST与各种代谢相关,19.3%的EST与信息存储和处理相关,11.3%的EST与翻译后修饰、蛋白质周转、伴侣蛋白相关,11.3%的EST与运输相关,9.9%的EST与信号转导/细胞通讯相关,9.0%的EST与结构蛋白相关,3.8%的EST与细胞周期相关,只有6.6%的EST被分类为新基因。通过EST测序,鉴定并表征了一个编码铁蛋白的全长基因。构建了重组质粒pET32a-TAT-铁蛋白,其编码在N端和C端带有两个6×His标签的TAT-铁蛋白融合蛋白。经过BCA测定,可溶性Trx-TAT-铁蛋白重组蛋白的浓度为2.32±0.12 mg/mL。这些结果表明,该cDNA文库的可靠性和代表性达到了标准cDNA文库的要求。该文库为孟加拉虎的功能基因组和转录组研究提供了一个有用的平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/217e/3709719/a3adc07a783b/ijms-14-11072f1.jpg

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