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计算对接和溶液X射线散射预测Ras激活因子七号无之子的组蛋白结构域具有膜相互作用功能。

Computational docking and solution x-ray scattering predict a membrane-interacting role for the histone domain of the Ras activator son of sevenless.

作者信息

Sondermann Holger, Nagar Bhushan, Bar-Sagi Dafna, Kuriyan John

机构信息

Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

出版信息

Proc Natl Acad Sci U S A. 2005 Nov 15;102(46):16632-7. doi: 10.1073/pnas.0508315102. Epub 2005 Nov 2.

Abstract

The Ras-specific nucleotide exchange factor son of sevenless (SOS) is a large, multidomain protein with complex regulation, including a Ras-dependent allosteric mechanism. The N-terminal segment of SOS, the histone domain, contains two histone folds, which is highly unusual for a cytoplasmic protein. Using a combination of computational docking, small-angle x-ray scattering, mutagenesis, and calorimetry, we show that the histone domain folds into the rest of SOS and docks onto a helical linker that connects the pleckstrin-homology (PH) and Dbl-homology (DH) domains of SOS to the catalytic domain. In this model, a positively charged surface region on the histone domain is positioned so as to provide a fourth potential anchorage site on the membrane for SOS in addition to the PH domain, the allosteric Ras molecule, and the C-terminal adapter-binding site. The histone domain in SOS interacts with the helical linker, using a region of the surface that in nucleosomes is involved in histone tetramerization. Adjacent surface elements on the histone domain that correspond to the DNA-binding surface of nucleosomes form the predicted interaction site with the membrane. The orientation and position of the histone domain in the SOS model implicates it as a potential mediator of membrane-dependent activation signals.

摘要

Ras特异性核苷酸交换因子七号less之子(SOS)是一种大型多结构域蛋白,具有复杂的调控机制,包括一种依赖Ras的变构机制。SOS的N端片段,即组蛋白结构域,包含两个组蛋白折叠,这对于一种细胞质蛋白来说是非常不寻常的。通过结合计算对接、小角X射线散射、诱变和量热法,我们表明组蛋白结构域折叠到SOS的其余部分,并对接在一个螺旋连接子上,该连接子将SOS的普列克底物蛋白同源(PH)和双鸟苷酸交换因子同源(DH)结构域连接到催化结构域。在这个模型中,组蛋白结构域上带正电的表面区域的定位方式是,除了PH结构域、变构Ras分子和C端衔接子结合位点之外,还为SOS在膜上提供了第四个潜在的锚定位点。SOS中的组蛋白结构域利用其表面的一个区域与螺旋连接子相互作用,该区域在核小体中参与组蛋白四聚化。组蛋白结构域上与核小体DNA结合表面相对应的相邻表面元件形成了与膜的预测相互作用位点。SOS模型中组蛋白结构域的方向和位置表明它可能是膜依赖性激活信号的潜在介导者。

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