Brooks Amanda J, Fox Christel C, Marsh E Neil G, Vlasie Monica, Banerjee Ruma, Brunold Thomas C
Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Biochemistry. 2005 Nov 22;44(46):15167-81. doi: 10.1021/bi051094y.
Glutamate mutase (GM) is a cobalamin-dependent enzyme that catalyzes the reversible interconversion of L-glutamate and L-threo-3-methylaspartate via a radical-based mechanism. To initiate catalysis, the 5'-deoxyadenosylcobalamin (AdoCbl) cofactor's Co-C bond is cleaved homolytically to generate an adenosyl radical and Co2+ Cbl. In this work, we employed a combination of spectroscopic and computational tools to evaluate possible mechanisms by which the Co-C bond is activated for homolysis. Minimal perturbations to the electronic absorption (Abs), circular dichroism (CD), and magnetic CD (MCD) spectra of AdoCbl are observed upon formation of holoenzyme, even in the presence of substrate (or a substrate analogue), indicating that destabilization of the Co3+ Cbl "ground state" is an unlikely mechanism for Co-C bond activation. In contrast, striking alterations are observed in the spectroscopic data of the post-homolysis product Co2+ Cbl when bound to glutamate mutase in the presence of substrate (or a substrate analogue) as compared to unbound Co2+ Cbl. These enzymatic perturbations appear to most strongly affect the metal-to-ligand charge-transfer transitions of Co2+ Cbl, suggesting that the cofactor/active-site interactions give rise to a fairly uniform stabilization of the Co 3d orbitals. Remarkable similarities between the results obtained in this study and those reported previously for the related Cbl-dependent isomerase methylmalonyl-CoA mutase indicate that a common mechanism by which the cofactor's Co-C bond is activated for homolytic cleavage may be operative for all base-off/His-on Cbl-dependent isomerases.
谷氨酸变位酶(GM)是一种依赖钴胺素的酶,它通过基于自由基的机制催化L-谷氨酸和L-苏糖-3-甲基天冬氨酸的可逆相互转化。为了启动催化作用,5'-脱氧腺苷钴胺素(AdoCbl)辅因子的Co-C键发生均裂,生成腺苷自由基和Co2+钴胺素。在这项工作中,我们结合使用了光谱学和计算工具来评估Co-C键被激活以进行均裂的可能机制。即使在存在底物(或底物类似物)的情况下,形成全酶时对AdoCbl的电子吸收(Abs)、圆二色性(CD)和磁圆二色性(MCD)光谱的扰动也很小,这表明Co3+钴胺素“基态”的不稳定不太可能是Co-C键激活的机制。相比之下,与未结合的Co2+钴胺素相比,当在底物(或底物类似物)存在下与谷氨酸变位酶结合时,均裂后产物Co2+钴胺素的光谱数据出现了显著变化。这些酶促扰动似乎对Co2+钴胺素的金属到配体电荷转移跃迁影响最大,这表明辅因子/活性位点相互作用导致Co 3d轨道相当均匀地稳定。本研究获得的结果与先前报道的相关钴胺素依赖性异构酶甲基丙二酰-CoA变位酶的结果之间存在显著相似性,这表明辅因子的Co-C键被激活以进行均裂的共同机制可能对所有碱基脱离/组氨酸结合的钴胺素依赖性异构酶都适用。