Adams Paul D, Oswald Robert E
Department of Molecular Medicine, Cornell University, Ithaca, New York 14853, USA.
Biochemistry. 2006 Feb 28;45(8):2577-83. doi: 10.1021/bi051686g.
Cdc42Hs(F28L) is a single-point mutant of Cdc42Hs, a member of the Ras superfamily of GTP-binding proteins, that facilitates cellular transformation brought about by an increased rate of cycling between GTP and GDP [Lin, R., et al. (1997) Curr. Biol. 7, 794-797]. Dynamics studies of Cdc42Hs(F28L)-GDP have shown increased flexibility for several residues at the nucleotide-binding site [Adams, P. D., et al. (2004) Biochemistry 43, 9968-9977]. The solution structure of Cdc42Hs-GDP (wild type) has previously been determined by NMR spectroscopy [Feltham, J. L., et al. (1997) Biochemistry 36, 8755-8766]. Here, we describe the solution structure of Cdc42Hs(F28L)-GDP, which provides insight into the structural basis for the change in affinity for GDP. Heteronuclear NMR experiments were performed to assign resonances in the protein, and distance, hydrogen bonding, residual dipolar coupling, and dihedral angle constraints were used to calculate a set of low-energy structures using distance geometry and simulated annealing refinement protocols. The overall structure of Cdc42Hs(F28L)-GDP is very similar to that of wild-type Cdc42Hs, consisting of a centrally located six-stranded beta-sheet structure surrounding the C-terminal alpha-helix [Feltham, J. L., et al. (1997) Biochemistry 36, 8755-8766]. In addition, the same three regions in wild-type Cdc42Hs that show structural disorder (Switch I, Switch II, and the Insert region) are disordered in F28L as well. Although the structure of Cdc42Hs(F28L)-GDP is very similar to that of the wild type, interactions with the nucleotide and hydrogen bonding within the nucleotide binding site are altered, and the region surrounding L28 is substantially more disordered.
Cdc42Hs(F28L)是Cdc42Hs的单点突变体,Cdc42Hs属于GTP结合蛋白的Ras超家族成员,它通过增加GTP与GDP之间的循环速率促进细胞转化[林,R.等人(1997年)《当代生物学》7,794 - 797]。对Cdc42Hs(F28L)-GDP的动力学研究表明,核苷酸结合位点的几个残基的灵活性增加[亚当斯,P.D.等人(2004年)《生物化学》43,9968 - 9977]。Cdc42Hs-GDP(野生型)的溶液结构先前已通过核磁共振光谱法确定[费尔瑟姆,J.L.等人(1997年)《生物化学》36,8755 - 8766]。在此,我们描述了Cdc42Hs(F28L)-GDP的溶液结构,这为深入了解对GDP亲和力变化的结构基础提供了依据。进行了异核核磁共振实验以确定蛋白质中的共振峰,并使用距离、氢键、剩余偶极耦合和二面角约束,通过距离几何和模拟退火优化方案计算出一组低能结构。Cdc42Hs(F28L)-GDP的整体结构与野生型Cdc42Hs非常相似,由围绕C端α螺旋的位于中心的六链β折叠结构组成[费尔瑟姆,J.L.等人(1997年)《生物化学》36,8755 - 8766]。此外,野生型Cdc42Hs中显示结构无序的相同三个区域(开关I、开关II和插入区域)在F28L中也无序。尽管Cdc42Hs(F28L)-GDP的结构与野生型非常相似,但与核苷酸的相互作用以及核苷酸结合位点内的氢键发生了改变,并且L28周围的区域无序程度明显更高。