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通过自由能梯度法对水溶液中氨电离过程的过渡态表征。

Transition-state characterization of the ammonia ionization process in aqueous solution via the free-energy gradient method.

作者信息

Nagaoka Masataka, Nagae Yukihiko, Koyano Yoshiyuki, Oishi Yuki

机构信息

Graduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.

出版信息

J Phys Chem A. 2006 Apr 6;110(13):4555-63. doi: 10.1021/jp056115c.

Abstract

For the ionization process of ammonia in aqueous solution, the transition-state (TS) structure was fully optimized for the first time on the free-energy surface (FES) by applying the free-energy gradient (FEG) method combined with a hybrid quantum mechanical and molecular mechanical molecular dynamics (QM/MM-MD) method. In aqueous solution, the ionization process was found to proceed by way of a clear TS (R(N1-H5) = 1.512 A), which does not exist in the gas phase. The free-energy (FE) of activation for ionization obtained was 14.7 kcal/mol, within the classical approximation, via the QM/MM-MD FEG method, and is found to be in good agreement with 9.57 kcal/mol estimated from the TS theory using the experimental value of the rate constant. Apart from the dynamic correction, it is indicated that the theoretical value would be improved to be 10.28 kcal/mol if the electronic-state calculation could be executed at the B3LYP/6-31G(d) level of theory.

摘要

对于氨在水溶液中的电离过程,首次通过应用自由能梯度(FEG)方法并结合量子力学与分子力学混合分子动力学(QM/MM-MD)方法,在自由能面(FES)上对过渡态(TS)结构进行了完全优化。在水溶液中,发现电离过程通过一个清晰的过渡态(R(N1-H5) = 1.512 Å)进行,而该过渡态在气相中不存在。通过QM/MM-MD FEG方法在经典近似下获得的电离活化自由能(FE)为14.7 kcal/mol,并且发现其与使用速率常数实验值根据过渡态理论估计的9.57 kcal/mol吻合良好。除了动力学校正外,还表明如果能在B3LYP/6-31G(d)理论水平上进行电子态计算,理论值将提高到10.28 kcal/mol。

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