Cohen-Hadar Noa, Wine Yariv, Nachliel Esther, Huppert Danny, Gutman Menahem, Frolow Felix, Freeman Amihay
Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Tel Aviv 69978, Israel.
Biotechnol Bioeng. 2006 Aug 5;94(5):1005-11. doi: 10.1002/bit.20935.
Protein crystals, routinely prepared for the elucidation of protein 3D structures by X-ray crystallography, present an ordered and highly accurate 3D array of protein molecules. Inherent to the 3D arrangement of the protein molecules in the crystal is a complementary 3D array of voids made of interconnected cavities and exhibiting highly ordered porosity. The permeability of the porosity of chemically crosslinked enzyme protein crystals to low molecular weight solutes, was used for enzyme mediated organic synthesis and size exclusion chromatography. This permeability might be extended to explore new potential applications for protein crystals, for example, their use as bio-templates for the fabrication of novel, nano-structured composite materials. The quality of composites obtained from "filling" of the ordered voids in protein crystals and their potential applications will be strongly dependent upon an accurate preservation of the order in the original protein crystal 3D array during the "filling" process. Here we propose and demonstrate the feasibility of monitoring the changes in 3D order of the protein array by a step-by-step molecular level monitoring of a model system for hydrogel bio-templating by glutaraldehyde crosslinked lysozyme crystals. This monitoring is based on step-by-step comparative analysis of data obtained from (i) X-ray crystallography: resolution, unit cell dimensions and B-factor values and (ii) fluorescence decay kinetics of ultra-fast laser activated dye, impregnated within these crystals. Our results demonstrated feasibility of the proposed monitoring approach and confirmed that the stabilized protein crystal template retained its 3D structure throughout the process.
蛋白质晶体通常通过X射线晶体学来制备,用于阐明蛋白质的三维结构,它呈现出蛋白质分子有序且高度精确的三维阵列。晶体中蛋白质分子的三维排列所固有的是由相互连接的腔构成的互补三维空隙阵列,且具有高度有序的孔隙率。化学交联酶蛋白晶体孔隙率对低分子量溶质的渗透性被用于酶介导的有机合成和尺寸排阻色谱。这种渗透性可能会被拓展,以探索蛋白质晶体的新潜在应用,例如,将其用作制造新型纳米结构复合材料的生物模板。从蛋白质晶体中有序空隙的“填充”获得的复合材料的质量及其潜在应用将强烈依赖于在“填充”过程中原始蛋白质晶体三维阵列中秩序的精确保留。在这里,我们提出并证明了通过对戊二醛交联溶菌酶晶体进行水凝胶生物模板化模型系统的逐步分子水平监测来监测蛋白质阵列三维秩序变化的可行性。这种监测基于对以下两方面数据的逐步比较分析:(i)X射线晶体学:分辨率、晶胞尺寸和B因子值;(ii)浸渍在这些晶体中的超快激光激活染料的荧光衰减动力学。我们的结果证明了所提出的监测方法的可行性,并证实了稳定的蛋白质晶体模板在整个过程中保留了其三维结构。