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酪氨酰-tRNA合成酶促进I组内含子整合到核糖体RNA序列中。

Integration of a group I intron into a ribosomal RNA sequence promoted by a tyrosyl-tRNA synthetase.

作者信息

Mohr G, Lambowitz A M

机构信息

Department of Molecular Genetics, Ohio State University, Columbus 43210.

出版信息

Nature. 1991 Nov 14;354(6349):164-7. doi: 10.1038/354164a0.

DOI:10.1038/354164a0
PMID:1658660
Abstract

Group I and II introns are mobile elements that propagate by insertion into different genes. Some introns of both types self-splice in vitro by transesterification reactions catalysed by the intron RNA. These transesterifications are reversible, and it has been suggested that reverse splicing followed by reverse transcription and recombination with genomic DNA may be a mechanism for intron transposition. In vivo the splicing of many, if not all, group I and II introns requires protein factors, which may facilitate correct folding of the intron RNAs. Here we show that the Neurospora mitochondrial large rRNA intron, a group I intron that is not self-splicing in vitro, undergoes reverse splicing in a reaction promoted by the CYT-18 protein, the Neurospora mitochondrial tyrosyl-tRNA synthetase, which is required for splicing the intron in vivo. In contrast to known RNA-catalysed reverse splicing reactions, this protein-assisted reverse splicing is sufficiently rapid to compete with forward splicing at low RNA concentrations under physiologically relevant conditions, including high GTP and low Mg2+ concentrations. Our results indicate that proteins that promote splicing could contribute to intron mobility by promoting reverse splicing in vivo.

摘要

I 类和 II 类内含子是通过插入不同基因进行传播的移动元件。这两类内含子中的一些在体外通过内含子 RNA 催化的酯交换反应进行自我剪接。这些酯交换反应是可逆的,有人提出,随后进行逆转录并与基因组 DNA 重组的反向剪接可能是内含子转座的一种机制。在体内,许多(如果不是全部的话)I 类和 II 类内含子的剪接需要蛋白质因子,这些蛋白质因子可能有助于内含子 RNA 的正确折叠。在这里,我们表明,粗糙脉孢菌线粒体大 rRNA 内含子,一种在体外不能自我剪接的 I 类内含子,在由 CYT-18 蛋白(粗糙脉孢菌线粒体酪氨酰-tRNA 合成酶,是该内含子在体内剪接所必需的)促进的反应中发生反向剪接。与已知的 RNA 催化的反向剪接反应不同,这种蛋白质辅助的反向剪接速度足够快,在生理相关条件下(包括高 GTP 和低 Mg2+浓度)的低 RNA 浓度下能够与正向剪接竞争。我们的结果表明,促进剪接的蛋白质可能通过在体内促进反向剪接来促进内含子的移动性。

相似文献

1
Integration of a group I intron into a ribosomal RNA sequence promoted by a tyrosyl-tRNA synthetase.酪氨酰-tRNA合成酶促进I组内含子整合到核糖体RNA序列中。
Nature. 1991 Nov 14;354(6349):164-7. doi: 10.1038/354164a0.
2
Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns.粗糙脉孢菌线粒体酪氨酰 - tRNA合成酶在RNA剪接中的功能。特异N端延伸的作用以及与不同I类内含子的不同相互作用模式。
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A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core.一种酪氨酰 - tRNA合成酶蛋白诱导I组内含子催化核心的三级折叠。
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Analysis of the CYT-18 protein binding site at the junction of stacked helices in a group I intron RNA by quantitative binding assays and in vitro selection.通过定量结合测定和体外筛选分析I组内含子RNA中堆叠螺旋交界处的CYT-18蛋白结合位点。
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A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme.酪氨酰-tRNA合成酶的功能可能与四膜虫核酶中的RNA结构类似。
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Interaction of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase (CYT-18 protein) with the group I intron P4-P6 domain. Thermodynamic analysis and the role of metal ions.粗糙脉孢菌线粒体酪氨酰 - tRNA合成酶(CYT - 18蛋白)与I类内含子P4 - P6结构域的相互作用。热力学分析及金属离子的作用。
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Characterization of Neurospora mitochondrial group I introns reveals different CYT-18 dependent and independent splicing strategies and an alternative 3' splice site for an intron ORF.粗糙脉孢菌线粒体I组内含子的特征揭示了不同的依赖和不依赖CYT-18的剪接策略以及一个内含子开放阅读框的替代性3'剪接位点。
RNA. 1997 Feb;3(2):114-31.
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A chloroplast group I intron undergoes the first step of reverse splicing into host cytoplasmic 5.8 S rRNA. Implications for intron-mediated RNA recombination, intron transposition and 5.8 S rRNA structure.一个叶绿体I类内含子经历反向剪接的第一步,插入宿主细胞质5.8 S rRNA中。这对内含子介导的RNA重组、内含子转座和5.8 S rRNA结构的影响。
J Mol Biol. 1994 Feb 18;236(2):455-68. doi: 10.1006/jmbi.1994.1157.
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The Neurospora mitochondrial tyrosyl-tRNA synthetase is sufficient for group I intron splicing in vitro and uses the carboxy-terminal tRNA-binding domain along with other regions.粗糙脉孢菌线粒体酪氨酸-tRNA合成酶在体外足以进行I组内含子剪接,并利用羧基末端tRNA结合结构域以及其他区域。
Genes Dev. 1991 Jun;5(6):1009-21. doi: 10.1101/gad.5.6.1009.

引用本文的文献

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2
Complex evolutionary patterns of tRNA Leu(UAA) group I introns in the cyanobacterial radiation [corrected].蓝细菌辐射中亮氨酰-tRNA(UAA)第一组内含子的复杂进化模式[已修正]
J Bacteriol. 1999 Jun;181(11):3445-51. doi: 10.1128/JB.181.11.3445-3451.1999.
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Influence of tRNA tertiary structure and stability on aminoacylation by yeast aspartyl-tRNA synthetase.酵母天冬氨酰 - tRNA合成酶对tRNA三级结构及稳定性在氨酰化作用上的影响。
Nucleic Acids Res. 1993 Jan 11;21(1):41-9. doi: 10.1093/nar/21.1.41.
4
An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence.26S核糖体RNA中的另一种螺旋结构促进了四膜虫间隔序列的切除与整合。
Mol Cell Biol. 1993 Feb;13(2):1137-45. doi: 10.1128/mcb.13.2.1137-1145.1993.
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Experimental studies on the origin of the genetic code and the process of protein synthesis: a review update.遗传密码的起源与蛋白质合成过程的实验研究:综述更新
Orig Life Evol Biosph. 1992;22(5):243-75. doi: 10.1007/BF01810856.
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Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing.黏菌核I类内含子的结构与进化:内含子归巢介导水平转移的模型
Curr Genet. 1992 Oct;22(4):297-304. doi: 10.1007/BF00317925.