Hao Q
Department of Chemistry, De Montfort University, Leicester LE1 9BH, UK.
J Synchrotron Radiat. 2000 May 1;7(Pt 3):148-51. doi: 10.1107/S0909049500003010.
This paper presents a brief survey of methods in ab initio phasing of one-wavelength anomalous-scattering data. In particular, the method implemented in the computer program OASIS has been tested using two new data sets from orotidine 5'-monophosphate decarboxylase (OMPDC) [Appleby et al. (2000). Proc. Natl Acad. Sci. USA. In the press] and PurE [Mathews et al. (1999). Structure, 7(11), 1395-1406]. The Se atoms were located by the small-molecule program SAPI. The electron density maps after OASIS and density modification for both structures clearly revealed the Calpha trace and, in the case of PurE, most side-chains. The test with the OMPDC data demonstrated that, by exploiting the anomalous signal at a single wavelength, direct methods can be used to determine phases at moderate ( approximately 2.5 A) macromolecular crystallographic resolution for a large-size protein (5663 non-H atoms in the asymmetric unit). The exceptionally good quality of the electron map shown in the case of PurE suggested that fully automatic model fitting is possible.
本文简要综述了单波长反常散射数据的从头相位确定方法。特别地,利用来自乳清苷5'-单磷酸脱羧酶(OMPDC)[Appleby等人(2000年)。《美国国家科学院院刊》。即将发表]和PurE[Mathews等人(1999年)。《结构》,7(11),1395 - 1406]的两个新数据集,对计算机程序OASIS中实现的方法进行了测试。通过小分子程序SAPI定位了硒原子。OASIS处理后的电子密度图以及对这两种结构的密度修正都清楚地显示出α-碳原子骨架,对于PurE结构,还显示出了大多数侧链。对OMPDC数据的测试表明,通过利用单波长处的反常信号,直接法可用于在中等(约2.5 Å)大分子晶体学分辨率下确定一个大尺寸蛋白质(不对称单元中有5663个非氢原子)的相位。PurE结构所示电子图的异常高质量表明全自动模型拟合是可行的。